BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06520.1
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480223 jgi|Araly1|480223|fgenesh2_kg.3__2924__AT2G06520.1 824 0.0
> Ahg480223 jgi|Araly1|480223|fgenesh2_kg.3__2924__AT2G06520.1
Length=526
Score = 824 bits (446), Expect = 0.0
Identities = 501/528 (95%), Gaps = 2/528 (0%)
Strand=Plus/Plus
Query 103 AAGATCAATCTAGAGAGACCAAAAAGAGATCGGAAGAGATGGCTTCTACCTCCGCGATGT 162
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGATCAATCTAGAGAGACC-AAAAGAGATCGGAAGAGATGGCTTCTACCTCCGCGATGT 59
Query 163 CATTGGTCACACCACTTAACCAGACCCGTTCGTCTCCTTTCCTTAAGCCATTACCTCTGA 222
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 60 CATTGGTCACGCCACTTAACCAGACCCGTTCGTCTCCTTTCCTCAAGCCATTACCTCTGA 119
Query 223 AACCATCCAAGGCTTTGGTTGCAACTGGAGGCAGAGCACAGAGGCTTCAAGTTAAGGCCC 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AACCATCCAAGGCTTTGGTTGCAACTGGAGGCAGAGCACAGAGGCTTCAAGTTAAGGCGC 179
Query 283 TCAAGATGGACAAGGCTTTGACCGGTATCTCCGCGGCTGCTCTTACTGCTTCGATGGTGA 342
||||||||||||||||||| ||||| ||||| || ||||||||||| |||||||||||||
Sbjct 180 TCAAGATGGACAAGGCTTTAACCGGAATCTCTGCAGCTGCTCTTACCGCTTCGATGGTGA 239
Query 343 TTCCGGAGATAGCTGAAGCTGCTGGTTCTGGAATCTCTCCTTCCCTCAAGAATTTCTTGC 402
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCCGGAGATAGCTGAGGCTGCTGGTTCTGGAATCTCTCCTTCCCTCAAGAATTTCTTGC 299
Query 403 TCAGCATTGCTTCTGGTGGCCTCGTCCTCACTGTCATCATTGGTGTCGTCGTCGGCGTCT 462
| |||||||||||||||||||| || ||||| ||||||||||||| |||||| ||||||
Sbjct 300 TGAGCATTGCTTCTGGTGGCCTTGTTCTCACCGTCATCATTGGTGCCGTCGTTGGCGTCG 359
Query 463 CCAACTTTGACCCTGTCAAGAGAACCTAAGACCTATATATCTTTCTTACATCATTATTGT 522
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 360 CCAACTTTGACCCTGTCAAGAGAACCTAAGAACTACATATCTTTCTTACATCATTATTGT 419
Query 523 AATCTGTTCTCCTTCTGTGTATTCGTTTCAATGTTGCAGCAATGAACTTTTGGATAAAAG 582
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 AATCTGTTCTCCTTCTGTGTATTCGTTT-AATGTTGCAGCAATGAACTTTTGGATAAAAG 478
Query 583 TCAAATTTGTTGTTTCCTGAATTCGAAAGACGATTGAGACTTGAAATC 630
| ||| |||||||||||||||||||||| |||| ||||| |||| |||
Sbjct 479 TAAAACTTGTTGTTTCCTGAATTCGAAAAACGAATGAGATTTGACATC 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23064364785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5