BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06530.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480224 jgi|Araly1|480224|fgenesh2_kg.3__2925__AT2G06530.1 1471 0.0
> Ahg480224 jgi|Araly1|480224|fgenesh2_kg.3__2925__AT2G06530.1
Length=982
Score = 1471 bits (796), Expect = 0.0
Identities = 898/946 (95%), Gaps = 12/946 (1%)
Strand=Plus/Plus
Query 69 TTTTTCAACTCCGATCAAAGGTTTTGCTAATTCGTCGCCTTAATTTCGTTCAAGCTTCTA 128
|||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 49 TTTTTCCAGTCCGATCAAAGGTTTTGCTAATTCGTCGGCTTAATTTCGTTCAAGCTTCTG 108
Query 129 CAAAAGTCCCAGATTTGTTCACCTTTTTCGGTATTGAATCATGATGAATTCAATCTTCGG 188
| ||| ||||||||||| | | || | | |||||||||||||||||||||||||
Sbjct 109 C-AAATTCCCAGATTTGGT-A-----TT--G-A-AGAATCATGATGAATTCAATCTTCGG 157
Query 189 AAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAGAACAAGCGGATGCTGGATAAGTCTAT 248
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 158 AAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAAAACAAGCGGATGCTCGATAAGTCTAT 217
Query 249 CAGAGAGATAGAGAGGGAGAGACAAGGCCTACAAACACAAGAAAAGAAACTCATTAACGA 308
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 218 CAGGGAGATAGAGAGGGAGAGACAAGGCCTTCAAACACAAGAAAAGAAACTCATTAACGA 277
Query 309 GATTAAAAAGACCGCAAAGCAAGGCCAAATGGGAGCTGTTAAAGTGATGGCAAAGGATCT 368
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 278 GATTAAAAAGACCGCAAAGCAGGGCCAGATGGGAGCCGTTAAAGTGATGGCAAAGGATCT 337
Query 369 TATAAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCTCAACTTCAAGGTGT 428
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 338 TATCAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCCCAACTTCAAGGTGT 397
Query 429 ATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCGATGGGTGAGGCGATGAAAGGTGT 488
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 398 ATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCAATGGGTGAGGCGATGAAAGGTGT 457
Query 489 GACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCAT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCAT 517
Query 549 GCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTTATGGGAGATGC 608
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 518 GCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTGATGGGAGATGC 577
Query 609 TATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCA 637
Query 669 AGTCCTTGACGAGATCGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGC 728
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 AGTCCTTGACGAGATTGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGC 697
Query 729 GGTCGCAGTACCCGCAGCAAAGAACAAGGTGGTACAAGCTGAGGCGACCGGAGCTGAGGA 788
||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 698 GGTGGCAGTACCAGCCGCAAAGAACAAGGTGGTGCAAGCTGAAGCGACCGGAGCTGAGGA 757
Query 789 CAGTGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGATAACCTTAGAAAAATGTGAAG 848
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 758 TAGCGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGACAACCTTCGAAAAATGTGAAG 817
Query 849 CCTTTCCTGTTTCTGTATCATAATATTACTGAGGCTGATCACTTTTCAATTTCAAAGGCA 908
||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 818 CCTTTCCGGTTTCTGTATCATATTATTACTGAGGCTGATCACTTTTCAACTTCAAAGGCA 877
Query 909 AATGTTGCAAACGATGTGTTAACGTTTTGGGGGTGGGTTTGTAATAAATTCATAATTTGA 968
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 878 AATGTTGCAAACGATATGTTAACGTTTTGGGGGTGGGTTTGTAATAATTTCATAATTTGA 937
Query 969 GCCCTATATTATAAAACTGATTATTGTTCAAACACTTTGTATATAA 1014
|||||| |||||||| | ||||||||||||||||| ||||||||||
Sbjct 938 GCCCTAAATTATAAACC-GATTATTGTTCAAACACCTTGTATATAA 982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5