BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06555.1
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494168 jgi|Araly1|494168|fgenesh2_kg.7__3601__AT2G06555.1 377 4e-104
Ahg481774 jgi|Araly1|481774|fgenesh2_kg.4__834__AT2G06555.1 377 4e-104
Ahg472336 jgi|Araly1|472336|fgenesh2_kg.1__2290__AT2G06555.1 377 4e-104
Ahg495891 jgi|Araly1|495891|fgenesh2_kg.8__1707__AT2G06555.1 366 9e-101
Ahg488659 jgi|Araly1|488659|fgenesh2_kg.6__1793__AT2G06555.1 309 2e-83
> Ahg494168 jgi|Araly1|494168|fgenesh2_kg.7__3601__AT2G06555.1
Length=458
Score = 377 bits (204), Expect = 4e-104
Identities = 381/460 (83%), Gaps = 37/460 (8%)
Strand=Plus/Plus
Query 92 TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG 151
|||||||||||||||| ||||||||||| ||| ||||||| | || |||| ||| |||||
Sbjct 1 TGTTATGAGTTTGCCTCTCGGACTCCTCACAGTGGAGAGAATGAAGATGATATTATCGTG 60
Query 152 CTTGCCTACAAGCTTTACCATCAAGATC---aaaa-aaa--CA-AATT---CATCCTT-G 200
|| ||||||||||||||||||||||||| |||| ||| || || ||| || |
Sbjct 61 CTGGCCTACAAGCTTTACCATCAAGATCAAAAAAACAAATTCAGTCTTGAGCATGTTTGG 120
Query 201 AG------CATGTTTG--GAG-AATCCT-CAA---GACT--GATCAAAGTTTCTGCCAAG 245
|| || | || || ||| | ||| | | || |||| || ||||||||
Sbjct 121 AGAATCCTCAAGACTGATCAGAAATGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAAG 180
Query 246 AAGAAAGCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAAG 305
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 181 AAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTTCAAAGGCCTATAGGTGTGAAG 240
Query 306 GCAGCCAAGGCTTCAGCCAAGTC-AAA---A--GAGAAGGATTTGACTGTCAAAGAGAGA 359
||| ||||||||| ||||||||| ||| | |||||||||||| ||| ||||||||||
Sbjct 241 GCAACCAAGGCTTTAGCCAAGTCCAAAGTGAAAGAGAAGGATTTGGCTGCCAAAGAGAGA 300
Query 360 CTCTCCAAACATAAGCTACTTGACAGCCTACTTA-ATAGGTCTAATGGATTGAGTGA-TA 417
|||||||| || ||||||||||||||||| ||| | |||||| ||||||||||||| |
Sbjct 301 CTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGTGAGT- 358
Query 418 TGGAAATTCAAATTAAAAATTCTCTTATCCAAGAGTATCTTTCTGGAAGCAATGTGTTTG 477
||||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 359 TGGAAATTCAACTTAAGAACTCTCTTATCCAAGAGTATCTGTCTGGAAGCAATGTGTTTG 418
Query 478 TTTCTGAGAATGAATATTCTG-ACTTCCTCTTGGAAGCTA 516
||| ||||||||||||||||| || |||||||||||||||
Sbjct 419 TTTTTGAGAATGAATATTCTGGACCTCCTCTTGGAAGCTA 458
> Ahg481774 jgi|Araly1|481774|fgenesh2_kg.4__834__AT2G06555.1
Length=447
Score = 377 bits (204), Expect = 4e-104
Identities = 367/440 (83%), Gaps = 34/440 (8%)
Strand=Plus/Plus
Query 92 TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG 151
|||||||||||||||| ||||||||||||||| ||||||| | || |||||||| |||||
Sbjct 1 TGTTATGAGTTTGCCTCTCGGACTCCTCGCAGTGGAGAGAATGAAGATGACATTATCGTG 60
Query 152 CTTGCCTACAAGCTTTACCATCAAGATC---aaaa-aaa--CA-AATT---CATCCTT-G 200
|| ||||||||||||||||||||||||| |||| ||| || || ||| || |
Sbjct 61 CTGGCCTACAAGCTTTACCATCAAGATCAAAAAAACAAATTCAGTCTTGAGCATGTTTGG 120
Query 201 AG------CATGTTTG--GAG-AATCCT-CAA---GACT--GATCAAAGTTTCTGCCAAG 245
|| || | || || ||| | ||| | | || |||| || ||||||||
Sbjct 121 AGAATCCTCAAGACTGATCAGAAATGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAAG 180
Query 246 AAGAAAGCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAAG 305
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 181 AAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTTCAAAGGCCTATAGGTGTGAAG 240
Query 306 GCAGCCAAGGCTTCAGCCAAGTC---A---AAAGAGAAGGATTTGACTGTCAAAGAGAGA 359
||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 241 GCAGCCAAGGCTTTAGCCAAGTCTAAAGTGAAAGAGAAGGATTTGGCTGTCAAAGAGAGA 300
Query 360 CTCTCCAAACATAAGCTACTTGACAGCCTACTT-AATAGGTCTAATGGATTGAGTGATAT 418
|||||||| || ||||||||||||||||| ||| | |||||| ||||||||||||| ||
Sbjct 301 CTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGTGAGAT 359
Query 419 GGAAATTCAAATTAAAAATTCTCTTATCCAAGAGTATCTTTCTGGAAGCAATGTGTTTGT 478
||||||| || |||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGAAATTGAACTTAAGAACACTCTTATCAAAGAGTATCTTTCTGGAAGCAATGTGTTTGT 419
Query 479 TTCTGAGAATGAATATTCTG 498
||||||||||||||||||||
Sbjct 420 TTCTGAGAATGAATATTCTG 439
> Ahg472336 jgi|Araly1|472336|fgenesh2_kg.1__2290__AT2G06555.1
Length=531
Score = 377 bits (204), Expect = 4e-104
Identities = 367/440 (83%), Gaps = 34/440 (8%)
Strand=Plus/Plus
Query 92 TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG 151
|||||||||||||||| ||||||||||||||| ||||||| | || |||||||| |||||
Sbjct 1 TGTTATGAGTTTGCCTCTCGGACTCCTCGCAGTGGAGAGAATGAAGATGACATTATCGTG 60
Query 152 CTTGCCTACAAGCTTTACCATCAAGATC---aaaa-aaa--CA-AATT---CATCCTT-G 200
|| ||||||||||||||||||||||||| |||| ||| || || ||| || |
Sbjct 61 CTGGCCTACAAGCTTTACCATCAAGATCAAAAAAACAAATTCAGTCTTGAGCATGTTTGG 120
Query 201 AG------CATGTTTG--GAG-AATCCT-CAA---GACT--GATCAAAGTTTCTGCCAAG 245
|| || | || || ||| | ||| | | || |||| || ||||||||
Sbjct 121 AGAATCCTCAAGACTGATCAGAAATGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAAG 180
Query 246 AAGAAAGCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAAG 305
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 181 AAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTTCAAAGGCCTATAGGTGTGAAG 240
Query 306 GCAGCCAAGGCTTCAGCCAAGTC---A---AAAGAGAAGGATTTGACTGTCAAAGAGAGA 359
||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 241 GCAGCCAAGGCTTTAGCCAAGTCTAAAGTGAAAGAGAAGGATTTGGCTGTCAAAGAGAGA 300
Query 360 CTCTCCAAACATAAGCTACTTGACAGCCTACTT-AATAGGTCTAATGGATTGAGTGATAT 418
|||||||| || ||||||||||||||||| ||| | |||||| ||||||||||||| ||
Sbjct 301 CTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGTGAGAT 359
Query 419 GGAAATTCAAATTAAAAATTCTCTTATCCAAGAGTATCTTTCTGGAAGCAATGTGTTTGT 478
||||||| || |||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGAAATTGAACTTAAGAACACTCTTATCAAAGAGTATCTTTCTGGAAGCAATGTGTTTGT 419
Query 479 TTCTGAGAATGAATATTCTG 498
||||||||||||||||||||
Sbjct 420 TTCTGAGAATGAATATTCTG 439
> Ahg495891 jgi|Araly1|495891|fgenesh2_kg.8__1707__AT2G06555.1
Length=467
Score = 366 bits (198), Expect = 9e-101
Identities = 365/440 (83%), Gaps = 34/440 (8%)
Strand=Plus/Plus
Query 92 TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG 151
|||||||||||||||| ||||||||||||||| ||||||||| || |||||||||| |||
Sbjct 1 TGTTATGAGTTTGCCTCTCGGACTCCTCGCAGTGGAGAGACTGAAGATGACATTCTTGTG 60
Query 152 CTTGCCTACAAGCTTTACCATCAAGATC--aaaa--aaa--CA-AATT---CATCCTT-G 200
|| |||||||||||||||||||| |||| |||| ||| || || ||| || |
Sbjct 61 CTGGCCTACAAGCTTTACCATCAGGATCAAAAAACCAAATTCAGTCTTGAGCATGTTTGG 120
Query 201 AG------CATGTTTG--GAGAA-TCCT-CAA---GACT--GATCAAAGTTTCTGCCAAG 245
|| || | || |||| | | ||| | | || |||| || ||||||||
Sbjct 121 AGAATCCTCAAGACTGATCAGAAGTGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAAG 180
Query 246 AAGAAAGCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAAG 305
||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 181 AAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTCCAAAGGCCTATAGGTGTGAAG 240
Query 306 GCAGCCAAGGCTTCAGCCAAGTC---A---AAAGAGAAGGATTTGACTGTCAAAGAGAGA 359
||||||||||||| ||||||||| | ||||||||||||||| || |||||||||||
Sbjct 241 GCAGCCAAGGCTTTAGCCAAGTCTAAAGTGAAAGAGAAGGATTTGGCTTTCAAAGAGAGA 300
Query 360 CTCTCCAAACATAAGCTACTTGACAGCCTACTT-AATAGGTCTAATGGATTGAGTGATAT 418
|||||||| || ||||||||||||||||| ||| | |||||| ||||||||||||| ||
Sbjct 301 CTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGTGAGAT 359
Query 419 GGAAATTCAAATTAAAAATTCTCTTATCCAAGAGTATCTTTCTGGAAGCAATGTGTTTGT 478
||||||| || |||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 360 GGAAATTGAACTTAAGAACACTCTTATCAAAGAGTATCTTTCTGGAAGCAATGTGTTTGT 419
Query 479 TTCTGAGAATGAATATTCTG 498
||||||||||||||||||||
Sbjct 420 TTCTGAGAATGAATATTCTG 439
> Ahg488659 jgi|Araly1|488659|fgenesh2_kg.6__1793__AT2G06555.1
Length=423
Score = 309 bits (167), Expect = 2e-83
Identities = 299/356 (84%), Gaps = 36/356 (10%)
Strand=Plus/Plus
Query 92 TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG 151
|||||||||||||||| ||||||||||||||| ||||||| | || |||||||| |||||
Sbjct 1 TGTTATGAGTTTGCCTCTCGGACTCCTCGCAGTGGAGAGAATGAAGATGACATTATCGTG 60
Query 152 CTTGCCTACAAGCTTTACCATCAAGATCaaaaaaaCAAATTCA-TCCTTGAGCATGTTTG 210
|| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 61 CTGGCCTACAAGCTTTACCATCAAGATCAAAAAAACAAATTTAGT-CTTGAGCATGTTTG 119
Query 211 GAGAATCCTCAAGACTGATCA-AA--G-T----TTC-TG-----CCAA-------G--AA 247
||||||||||||||||||||| || | | || || |||| | ||
Sbjct 120 GAGAATCCTCAAGACTGATCAGAAATGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAA 179
Query 248 GAA-A--GCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAA 304
||| | ||||||||||||||||||||| |||| ||||| |||||||||||||||||||
Sbjct 180 GAAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTCCAAAGGCCTATAGGTGTGAA 239
Query 305 GGCAGCCAAGGCTTCAGCCAAGTC-AAA---A--GAGAAGGATTTGACTGTCAAAGAGAG 358
|||||||||||||| ||||||||| ||| | |||||||||||| || ||||||||||
Sbjct 240 GGCAGCCAAGGCTTTAGCCAAGTCTAAAGTGAAAGAGAAGGATTTGGCTTTCAAAGAGAG 299
Query 359 ACTCTCCAAACATAAGCTACTTGACAGCCTACTTA-ATAGGTCTAATGGATTGAGT 413
||||||||| || ||||||||||||||||| ||| | |||||| |||||||||||
Sbjct 300 ACTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGT 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22759381449
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5