BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06850.1
Length=1214
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480225 jgi|Araly1|480225|fgenesh2_kg.3__2926__AT2G06850.1 1474 0.0
> Ahg480225 jgi|Araly1|480225|fgenesh2_kg.3__2926__AT2G06850.1
Length=1072
Score = 1474 bits (798), Expect = 0.0
Identities = 911/966 (94%), Gaps = 6/966 (1%)
Strand=Plus/Plus
Query 49 tcatcatcatcatcatTTCTCTCTATCTCTTTCTAAAACACAACCATGACTGTTTCTTCA 108
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 34 TCACCATCATCATCA-TT-TCTCTATCTCTTTCTAAAACACAACCATGACTGTTTCTTCA 91
Query 109 TCTCCATGGGCTCTCATGGCTCTCTTTCTAATGGTTTCTTCAACAATGGTAATGGCTATT 168
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 92 TCTCCATGGGCTCTGATGGCTCTGTTTCTGATGGTTTCTTCAACAATGGTAATGGCAATT 151
Query 169 CCTCCACGCAAGGCCATTGATGTACCATTTGGTCGTAACTACGTCCCAACTTGGGCTTTT 228
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 152 CCTCCACGCAAGGCCATTGATGTCCCCTTTGGGCGTAACTACGTCCCAACTTGGGCTTTT 211
Query 229 GACCACCAGAAACAGTTCAATGGCGGTTCCGAACTTCAGCTTATCCTCGACAAATACACT 288
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 212 GACCACCAGAAACAGTTCAATGGCGGTTCTGAACTTCAGCTTATCCTCGACAAAAACACT 271
Query 289 GGCACAGGATTTCAATCAAAGGGGTCATATTTGTTTGGACATTTTAGTATGCACATAAAG 348
|| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 272 GGGACAGGGTTTCAATCAAAAGGCTCATATTTGTTTGGACATTTTAGTATGCACATAAAG 331
Query 349 CTTCCAGCTGGTGACACAGCCGGAGTTGTCACAGCTTTCTATCTATCATCTACCAACAAT 408
||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 332 CTTCCGGCTGGTGACACAGCTGGAGTTGTCACAGCTTTCTATCTTTCATCGACCAACAAC 391
Query 409 GAGCATGACGAGATAGACTTTGAGTTCCTTGGAAACAGAACAGGACAACCAGCTATATTA 468
|||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 392 GAGCATGACGAGATAGACTTTGAGTTTCTTGGGAACCGAACAGGACAACCAGCAATATTG 451
Query 469 CAGACAAATGTATTCACAGGAGGAAAGGGAAACAGAGAACAACGAATCTATCTCTGGTTT 528
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 452 CAGACAAATGTGTTCACAGGAGGAAAAGGAAACAGAGAACAACGCATCTATCTCTGGTTT 511
Query 529 GATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTATTC 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 512 GATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTTTTC 571
Query 589 TTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCTAGGAGTACGTTTC 648
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 572 TTTGTTGACAACATACCAATCCGAACGTTCAAGAACGCTAAGGATTTAGGAGTACGTTTC 631
Query 649 CCATTCAACCAACCAATGAAGCTTTACTCAAGCCTTTGGAACGCGGATGATTGGGCCACG 708
|||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 632 CCATTCAACCAACCGATGAAGCTTTACTCGAGCCTTTGGAACGCTGATGATTGGGCCACT 691
Query 709 AGAGGCGGTTTAGAGAAGACCAATTGGGCCAATGCACCTTTCGTTGCATCTTACAAAGGA 768
|||||||| |||||||| |||||||||||||||||||||||| ||||||| |||||||||
Sbjct 692 AGAGGCGGCTTAGAGAAAACCAATTGGGCCAATGCACCTTTCATTGCATCCTACAAAGGA 751
Query 769 TTCCACATAGATGGTTGCCAAGCTTCTGTGGAAGCCAAGTACTGTGCCACACAAGGCCGC 828
||| |||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 752 TTCTACATTGATGGTTGCCAAGCTTCTGTGGAAGCTAAGTACTGTGCCACCCAAGGCCGC 811
Query 829 ATGTGGTGGGATCAGAAAGAGTTCCGTGACCTTGACGCTGAACAATGGCGTCGTCTCAAA 888
||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 812 ATGTGGTGGGACCAGAATGAATTCCGTGACCTTGACGCTGAACAATGGCGCCGTCTCAAA 871
Query 889 TGGGTTCGTATGAAGTGGACCATCTACAACTACTGTACCGACCGGACTAGGTTCCCGGTT 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 TGGGTTCGTATGAAGTGGACCATCTACAACTACTGTACCGACCGGACTAGGTTCCCGGTT 931
Query 949 ATGCCAGCTGAATGTAAAAGGGACAGAGACGCATAAGTTACTACTCTTGAGGGTTTTAAT 1008
|||||||| ||||||||||||||||||||||||||||| ||| || | |||||||| |||
Sbjct 932 ATGCCAGCGGAATGTAAAAGGGACAGAGACGCATAAGT-ACT-CT-T-GAGGGTTTCAAT 987
Query 1009 GAATTT 1014
| ||||
Sbjct 988 GGATTT 993
Score = 132 bits (71), Expect = 7e-30
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1042 TTGTTCAAGAGATTGATATATGTATTGTTTGTTGGCCCATGATGTTTATGCTATATTTGG 1101
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 993 TTGTTCAAGAGATTGATATATGTATTGTTTGTTGGCCCGTGATGTTTATGCTATGTTTGG 1052
Query 1102 GCCTAAAATTACATGTTATA 1121
||||||| ||||||||||||
Sbjct 1053 GCCTAAATTTACATGTTATA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45328148313
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5