BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G06925.1
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930945 jgi|Araly1|930945|scaffold_303402.1 857 0.0
> Ahg930945 jgi|Araly1|930945|scaffold_303402.1
Length=518
Score = 857 bits (464), Expect = 0.0
Identities = 501/519 (97%), Gaps = 1/519 (0%)
Strand=Plus/Plus
Query 38 ACCAAAACCAACAAATATATTCTTCTCACTTTCCGAGCTTTCCAGTTCAACTATGGCGGC 97
|||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1 ACCAAAACCAAC-AATATATTCTTCTCACTTTTCGAGCTTTCCTGTTCAACTATGGCGGC 59
Query 98 TCCGATCATACTTTTCTCTTTCCTTTTATTCTTCTCTGTCTCTGTCTCGGCACTTAACGT 157
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 60 TCCGATCATACTTTTCTCTTTCCTTTTCTTCTTCTCTGTCTCCGTCTCTGCACTTAACGT 119
Query 158 CGGTGTTCAGCTCATACATCCCTCCATTTCCTTGACTAAAGAATGTAGCCGGAAATGTGA 217
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 120 CGGTGTTCAGCTCATACATCCATCCATTACCTTGACTAAAGAATGTAGCCGGAAATGTGA 179
Query 218 ATCAGAGTTTTGTTCAGTGCCTCCATTTCTGAGGTATGGGAAGTACTGTGGACTACTTTA 277
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 180 ATCAGAGTTCTGTTCAGTGCCTCCATTTTTGAGGTATGGGAAGTACTGTGGACTACTATA 239
Query 278 CAGTGGATGTCCTGGTGAGAGACCTTGTGATGGTCTTGATTCTTGTTGCATGAAACATGA 337
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGTGGATGTCCTGGGGAGAGACCTTGTGATGGTCTTGATTCTTGTTGCATGAAACATGA 299
Query 338 TGCTTGTGTCCAATCCAAGAATAATGATTATCTAAGCCAAGAGTGTAGTCAGAAGTTCAT 397
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 TGCTTGTGTCCAATCAAAGAATAATGATTATTTAAGCCAAGAGTGTAGTCAGAAGTTCAT 359
Query 398 TAACTGCATGAACAATTTCAGCCAGAAGAAGCAACCGACGTTCAAAGGTAACAAATGCGA 457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 AAACTGCATGAACAATTTCAGCCAGAAGAAGCAACCGACGTTCAAAGGTAACAAATGTGA 419
Query 458 CGCTGATGAAGTGATTGATGTCATCTCCATTGTCATGGAAGCTGCTCTTATCGCCGGCAA 517
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCCGATGAAGTTATTGATGTCATCTCCATTGTCATGGAAGCTGCTCTTATCGCCGGCAA 479
Query 518 AGTCCTCAAGAAACCCTAACTATTTATATATATTTTTCT 556
|||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGTCCTCAAGAAACCCTAACTATTTATATATATTTTTCT 518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24131806461
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5