BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G06983.1

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930951 jgi|Araly1|930951|scaffold_303408.1                        148    1e-35


> Ahg930951 jgi|Araly1|930951|scaffold_303408.1
Length=197

 Score =  148 bits (80),  Expect = 1e-35
 Identities = 86/89 (97%), Gaps = 0/89 (0%)
 Strand=Plus/Plus

Query  176  AAACTAAGCGTTGTGATTGTCAAGACATGCTTGGGACATTCAAGGGCTGGCATTTCTGCA  235
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  89   AAACTAAGCGTTGTGATTGTCAAGACATGCTTGGGACATTTAAGGGCTGGCATTTCTGCA  148

Query  236  CATGTTACAGTGGTCGTCCTGGTTGCTAA  264
            ||||||| |||||||||||||| ||||||
Sbjct  149  CATGTTATAGTGGTCGTCCTGGCTGCTAA  177


 Score =  124 bits (67),  Expect = 2e-28
 Identities = 67/67 (100%), Gaps = 0/67 (0%)
 Strand=Plus/Plus

Query  1   ATGAGATCAATCACTTGGTTTATAGTTTTCTGTGTTTTCATGTTCATCGCTTTAAACCAT  60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  22  ATGAGATCAATCACTTGGTTTATAGTTTTCTGTGTTTTCATGTTCATCGCTTTAAACCAT  81

Query  61  GTTAAAG  67
           |||||||
Sbjct  82  GTTAAAG  88



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9203370901


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5