BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07020.1
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg342926 jgi|Araly1|342926|fgenesh1_pg.C_scaffold_3002689 1893 0.0
Ahg330184 jgi|Araly1|330184|fgenesh1_pm.C_scaffold_7002411 813 0.0
> Ahg342926 jgi|Araly1|342926|fgenesh1_pg.C_scaffold_3002689
Length=2133
Score = 1893 bits (1025), Expect = 0.0
Identities = 1267/1384 (92%), Gaps = 15/1384 (1%)
Strand=Plus/Plus
Query 714 GTTTGAAGACAATCGATCCAACTATGCTACATCCTCAAGCTCATCTGAAAAACAGTCCAT 773
|||||||||||| ||| || || ||||||||||||||||||||| || || ||||||||
Sbjct 753 GTTTGAAGACAACCGAGACAGCTTTGCTACATCCTCAAGCTCATCAGATAAGCAGTCCAT 812
Query 774 AGATTTGTGTTCTTCTTATTCTGCATTCTCCACAAGCTCCCAAGAAAGTGGGAGACTCTC 833
||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 813 AGATTTGGGTTCTTCTTATTCTGCATTCTCCACAAGTTCACAAGAAAGTGGGAGACTCTC 872
Query 834 ATCATTGTCAATGTATAGCCAGGATGATGTAGAATCTGAGATGAGAAGGCTAAAACTAGA 893
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CTCATTATCAATGCATAGCCAGGATGATGTAGAATCTGAGATGAGAAGGCTAAAACTAGA 932
Query 894 ACTTAAGTATACAATGGACATGTATAATAGTGCATGCAAAGAAGCAATCGCAGCTAAGAA 953
|| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 933 GCTAAAGTATACAATGGACATGTATAGTAGTGCATGCAAAGAGGCAATCGCAGCTAAGAA 992
Query 954 GACGACTATTGAGTTACACAAATGGAAAGAAGAAAGGAAACATAAACTAGAAGAAGCAAT 1013
|||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 993 GACGACTACTGAGTTACACAAGTGGAAAGAGGAAAGAAAACATAAACTAGAAGAAGCAAT 1052
Query 1014 ACTTGCCAAAGAAGCAGCAATGGCAATAGCAGAGAATGAGAAGGCAAAGAGTAGAGCAGC 1073
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1053 ACTTGCCAAAGAAGCAGCGCTGGCAATAGCAGAGAATGAGAAGGCAAAGAGCAGAGCAGC 1112
Query 1074 CATGGAAGCATTAGAAGCCGCTCATAGAATGGCTGAAACCGAAGCTCAAAAAAGAAAGCA 1133
||||||||||||| || |||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1113 TATGGAAGCATTAGCGGCAGCTCATAGAATGGCAGAAATCGAAGCTCAAAAGAGAAAGCA 1172
Query 1134 AATCGAAACGGCGGCTCT-ACGAGAAGTAGA-GCATGAA-AATAAAGCAATGCATGCTTT 1190
|||||||||||| ||||| | ||||||| || | || || ||||||| ||||||| ||||
Sbjct 1173 AATCGAAACGGCAGCTCTGA-GAGAAGTCGATG-AT-AACAATAAAGAAATGCATTCTTT 1229
Query 1191 ACCTCATAGTAATAGAATGTATAGGAAATACACAATTGAGGAGATTGAACAAGGAACAAC 1250
| |||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||| |
Sbjct 1230 AACTCATAGTGATAGAATGTATAGAAAATACACGATTGAGGAGATTGAAGAAGGAAC-AG 1288
Query 1251 AAAA-TTCTCAGATAGTCATAAGATTGGAGAAGGCAGTTATGGAACAGTTTACAAGGGTA 1309
|||| |||||||||||||| ||||||||||||||| |||||||| | |||||||||||||
Sbjct 1289 AAAATTTCTCAGATAGTCACAAGATTGGAGAAGGCGGTTATGGACCTGTTTACAAGGGTA 1348
Query 1310 CTCTAGATTACACACCAGTGGCGATAAAAGTTGTGAGACCGGATGCAACACAAGGAAGAT 1369
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1349 TTCTAGATTACACACCAGTGGCGATAAAAGTTGTGAGACCGGATGCAACACAAGGAAGAT 1408
Query 1370 CACAGTTCCAGCAAGAAGTGGAAGTCTTGACATGTATAAGACATCCTAATATGGTTCTGC 1429
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1409 CACAGTTCCAGCAAGAAGTGGAAGTCTTGACCTGTATAAGACATCCAAATATGGTTCTGC 1468
Query 1430 TCCTTGGAGCCTGTGCGGAATACGGATGTTTAGTCTACGAATACATGTCCAATGGTAGCT 1489
| ||||||||||| ||||||||||| ||||||||||| ||||||||| |||||||||| |
Sbjct 1469 TGCTTGGAGCCTGCGCGGAATACGGGTGTTTAGTCTATGAATACATGGCCAATGGTAGAT 1528
Query 1490 TAGACGATTGTCTCCTTAGACGAGGAAACTCTCCAGTGCTTTCTTGGCAGCTAAGATTCC 1549
|||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1529 TAGAAGATCGTCTCCTTAGACGAGGCAACTCTCCAGTGCTTTCATGGCAGCTAAGATTCC 1588
Query 1550 GCATTGCAGCTGAAATCGCCACTAGCCTTAATTTCCTTCACCAGCTAAAGCCAGAGCCAC 1609
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1589 GCATTGCAGCTGAAATCGCCACGAGTCTTAATTTCCTTCACCAGCTAAAACCAGAGCCAC 1648
Query 1610 TAGTGCACCGCGACTTGAAACCAGCTAACATATTACTTGACCAGCACATGGTCAGCAAGA 1669
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1649 TAGTGCACCGCGACTTGAAACCAGCAAACATATTACTTGACCAGCACATGGTCAGCAAGA 1708
Query 1670 TTTCTGATGTTGGGTTGGCTAGGCTTGTCCC---TCCCACAATTGATGACATCGCAACGC 1726
| ||||||||||||||||||||||||||||| |||| |||||||||||||| | |
Sbjct 1709 TCTCTGATGTTGGGTTGGCTAGGCTTGTCCCAGCTCCCTTGGTTGATGACATCGCATCAC 1768
Query 1727 ATTATAGAATGACATCCACTGCTGGAACATTGTGTTACATTGATCCAGAATACCAGCAAA 1786
||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1769 ATTATAGAATGACGTCCGCTGCTGGAACATTGTGTTATATTGATCCAGAATACCAACAAA 1828
Query 1787 CTGGTATGCTTGGAACCAAATCAGACATATACTCATTTGGGATTGTGCTCTTGCAAATAC 1846
|||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 1829 CTGGTATGCTTGGAACCAAATCGGACATATACTCATTCGGGATTATGCTCTTGCAAATAC 1888
Query 1847 TTACAGCAAAGACACCAATGGGTTTGACAAATCAAGTTGAGAAAGCAATTGAGGAAGGAA 1906
||||||| ||| |||||||||| ||||||| ||| ||||||| |||||||||||||||||
Sbjct 1889 TTACAGCCAAGCCACCAATGGGCTTGACAAGTCAGGTTGAGAGAGCAATTGAGGAAGGAA 1948
Query 1907 ATTTTGCCAAGATACTTGACCCTCTTGTTACTGATTGGCCAATTGAAGAGGCTTTAATAT 1966
||||| | || |||| |||||| ||||| ||||||||||| |||||||||| ||| |||
Sbjct 1949 ATTTTTCTGAGGTACTAGACCCTGTTGTTGCTGATTGGCCACTTGAAGAGGCCTTAGTAT 2008
Query 1967 TAGCAAAAATCGGTTTACAATGCGCAG-AGTTAAGACGGAAAGATAGACCTGACTTGGGA 2025
|||||||| |||||||||||||||||| | ||||| |||||||||||||||||| |||||
Sbjct 2009 TAGCAAAACTCGGTTTACAATGCGCAGCA-TTAAGGCGGAAAGATAGACCTGACCTGGGA 2067
Query 2026 ACGGTTGTGTTGCCTGGGCTGAAAAGGCTCATGAATTTAGCAGAAGAAAACATGTCT-AT 2084
| ||||||||||||| ||| |||||||||||| ||||||||||| |||||||| || ||
Sbjct 2068 AATGTTGTGTTGCCTGAGCTTAAAAGGCTCATGGATTTAGCAGAAAAAAACATG-CTTAT 2126
Query 2085 CACG 2088
||||
Sbjct 2127 CACG 2130
Score = 1077 bits (583), Expect = 0.0
Identities = 676/721 (94%), Gaps = 5/721 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAAGATGGTAGATGGTGAGCGAAGAGACGAAAGCGTTGCAATTGCGATTGATCGA 60
||||||||||||||| | ||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1 ATGGTGAAGATGGTAAACGGTGAGCGAAGAGACGAAAGCGTCGCAATTGCTATCGATCGA 60
Query 61 GACAAAGGAAGTCAGGCTGCATTGAAATGGGCTGTTGATAATCTTTTGACACCAGGAGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACAAAGGAAGTCAGGCTGCATTGAAATGGGCTGTTGATAATCTTTTGACACCAGGAGAG 120
Query 121 ACTCTAACTCTTATTCATGTTAAAGTCAAGCAAACCCTTGCTAATAATGGGACTCAACCA 180
||||| |||||| | ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTCTTACTCTTGTCCATGTCAGAGTCAAGCAAACCCTTGCTAATAATGGGACTCAACCA 180
Query 181 AATAAGTCTGGAGATGACGTTAAGGAACTGTTTCTTCCATTCCGATGTTTCTGCACTAGG 240
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 181 AATAAGTCTGGAGATGACGTTAAGGAATTGTTTCTTCCATTCCGTTGTTTCTGCACTAGA 240
Query 241 AAAGACATAAATTGTGAAGAGGTAGTATTGGA-GAACGTTGATGCTGCAGAAGGAATCAT 299
|||||||||||||||||||||||||||||||| || || |||||||||| ||||||||||
Sbjct 241 AAAGACATAAATTGTGAAGAGGTAGTATTGGAAGA-CGATGATGCTGCAAAAGGAATCAT 299
Query 300 AGAGTATGTACAAGAGAATGCAATCGATATTCTAGTACTCGGTGCATCTAAGATAACTCT 359
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 300 AGAGTATGTGCAAGAGAATGCAATCGATATTCTAGTACTCGGTGCATCTAAGATGACTCT 359
Query 360 TTTAAAGCGGTTAAAAGCGGTAGATGTTACAAACGCAGTGATAAAAGGAGCACCCAATTT 419
|||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 360 TTTAAAACGGTTCAAAGCGGTAGATGTTACAAGCGCAGTGATGAAAGGAGCACCCAATTT 419
Query 420 CTGTACAGTTTATGCAATCTCTAAAGGTAAAATTTCGTCCGTTAGATCAGCTACCTCTTC 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CTGTACAGTTTATGCAATCTCTAAAGGTAAAATCTCGTCCGTTAGATCAGCTACCTCTTC 479
Query 480 ACCTCCTCCACTTTGCACAATACGTCCACAATTACCAGCTCGGTCAAGTAATGCCAACAA 539
||||||||||||||||||||||||||||||||||||||||||| | || ||||||| |||
Sbjct 480 ACCTCCTCCACTTTGCACAATACGTCCACAATTACCAGCTCGGGCGAGCAATGCCAGCAA 539
Query 540 CAACAACTTCAGTCCTAGAGCTCAGAGAAGGCTTCAATCAGTGCAAAGTATACAAGACGA 599
|||||||| |||||||||| || |||||||||||||||||||| |||||| |||||||||
Sbjct 540 CAACAACTCCAGTCCTAGAACTGAGAGAAGGCTTCAATCAGTGGAAAGTACACAAGACGA 599
Query 600 GATCGAGAT---CAAGTCTCCATATTTGAGAAAAGAATATGATCAAGGGACATACCAGGC 656
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 GATCGAGATGATCAAGTGTCCATATTTGAGAAAAGAATATGATCAAGGGACATACCAAGC 659
Query 657 CTTAGTGTCGGACTCAGACTTATCCTTTGTGAGTAGTGATAGGCCAAGCATGGATTGGTT 716
|| |||| | ||||| |||||||| ||| |||||||||||||||||||| ||||||||||
Sbjct 660 CTCAGTGACAGACTCCGACTTATCGTTTATGAGTAGTGATAGGCCAAGCGTGGATTGGTT 719
Query 717 T 717
|
Sbjct 720 T 720
> Ahg330184 jgi|Araly1|330184|fgenesh1_pm.C_scaffold_7002411
Length=2214
Score = 813 bits (440), Expect = 0.0
Identities = 1018/1289 (79%), Gaps = 72/1289 (6%)
Strand=Plus/Plus
Query 817 GAAAGTGGGAGACTCTCATCATTGTCAATGTATAGCCAGGATGATG-TAGAATCTGAGAT 875
|||||||||||| | |||||| ||| | | ||||||||||| | | ||| | |||||
Sbjct 838 GAAAGTGGGAGA--C-AATCATTCTCACTACAGAGCCAGGATGA-GATTGAAACCGAGAT 893
Query 876 GAGAAGGCT-AAAACTAGAACTTAAGTATACAATGGACATGTATAATAGTGCATGCAAAG 934
||||||||| |||| | || || ||| |||||||||| |||||||| ||||| ||||| |
Sbjct 894 GAGAAGGCTGAAAA-TGGAGCTAAAGCATACAATGGAAATGTATAACAGTGCCTGCAAGG 952
Query 935 AAGCAATCGCAGCTAAG-AAGACGACTATTGAGTTACACAAATGGAAAGAAGA-AAGGAA 992
||||||| | || ||| ||| || ||| |||||||||||| ||||||| ||| |||| |
Sbjct 953 AAGCAATATCTGCAAAGAAAG-CGGCTAATGAGTTACACAAGTGGAAAGCAGATAAGG-A 1010
Query 993 ACATAAACTAGAAGAAGCAATACTTGCCAAAGAAGCAGCAATGGCAATAGCAGAGA-ATG 1051
||||||| ||||||| | | ||||||||| || |||||||||||||| ||||||| | |
Sbjct 1011 ACATAAATTAGAAGAGGTGAGACTTGCCAAGGAGGCAGCAATGGCAATGGCAGAGAGA-G 1069
Query 1052 AG-AAGGCAAAGAGTAGAGCAGCCATGGAAGCATTAGAAGCCGCTCATAGAATGGCTGAA 1110
|| ||| |||| | ||||||||||||||||| || || ||||| ||||| | |
Sbjct 1070 AGAAAGAAAAAG-GCAGAGCAGCCATGGAAGCGGCAGTGGCAGCTCAAAGAATATCAG-C 1127
Query 1111 AC-CGAAGCTCAAAAAAGAAAGCAAATCGAAACGGCGGCTCTACGAGAAGTAGAGCATGA 1169
|| ||||||||||| ||||||||||| ||||| | | | || ||| |||| ||
Sbjct 1128 ACTTGAAGCTCAAAAGAGAAAGCAAATTGAAAC--C--ATAGAGGAAAAGAAGAGGGTG- 1182
Query 1170 AAATAAAGCAATGCATGCTTTACCT-CATAGTAATAGAATGTATAGGAAATACACAATTG 1228
|| | | | | || || | | | |||| || ||| || ||||||| ||||
Sbjct 1183 --AT---G---T-C-TTCTGTA-GTGAAAACTAATTTAAGGTACAGAAAATACAGTATTG 1231
Query 1229 AGGAGATTGAACAAGGAACAACAA-AATTCTCAG-ATAGTCATAAGATTGGAGAAGGCA- 1285
||||||||||| ||| || | || | ||||| | ||||| ||| | |||||||| |
Sbjct 1232 AGGAGATTGAAGAAGCCAC-AGAAGATTTCTC-GCCTAGTCGCAAGGTAGGAGAAGG-AG 1288
Query 1286 GTTATGGAACAGTTTACAAGGGTACTCTAGATTACAC-ACCAGTGGCGATAAAAGTTGTG 1344
| |||||| | ||||||||||| || |||||||| || | |||||| ||||||||| |
Sbjct 1289 GCTATGGACCTGTTTACAAGGGAACACTAGATTATACTA-AAGTGGCAATAAAAGTTCTA 1347
Query 1345 AGACCGGATGCAACACAAGGAAGATCACAGTTCCAGCAAGAAGTGGAAGT-CTTGACATG 1403
||||| ||||| |||||||||| || ||||||||||||||||| ||||| | | || ||
Sbjct 1348 AGACCAGATGCGGCACAAGGAAGGTCTCAGTTCCAGCAAGAAGTTGAAGTAC-TAACCTG 1406
Query 1404 TATAAGACATCCTAATATGGTTCTGCTCCTTGGAGCCTGTGCGGAATACGGATGTTTAGT 1463
||| |||||||| || |||||||| || ||||| |||||| |||||||||||||||||||
Sbjct 1407 TATGAGACATCCAAACATGGTTCTCCTGCTTGGTGCCTGTCCGGAATACGGATGTTTAGT 1466
Query 1464 CTACGAATACATGTCCAATGGTAGCTTAGACGATTGTC-TCCTT-AGACGAGGAAACTCT 1521
||||||||||||| |||||||||||||||| || || | || || |||||||||||||||
Sbjct 1467 CTACGAATACATGGCCAATGGTAGCTTAGAAGACTG-CATC-TTCAGACGAGGAAACTCT 1524
Query 1522 CCAGTGCTTTCTTGGCAGCTAAGATTCCGCATTGCAGCTGAAATCGCCACTAGCCTTAAT 1581
||| | |||||||||||||||||||| || || |||||||||||||| || | ||| ||
Sbjct 1525 CCAATCCTTTCTTGGCAGCTAAGATTTCGTATAGCAGCTGAAATCGCAACCGGTCTTCAT 1584
Query 1582 TTCCTTCACCAGCT-AAAGCCAGAGCCACTAGTGCACCGCGAC-TTGAAACCAGCTAACA 1639
||||| |||||| | ||| || ||||| |||||||||| ||| || ||||| | ||||
Sbjct 1585 TTCCTCCACCAGATGAAA-CCGGAGCCTTTAGTGCACCGTGACCTT-AAACCGGGAAACA 1642
Query 1640 TATTACTTGACCAGCACATGGTCAGCAAGATTTCTGATGTTGGGTTGGCTAGGCTTGTCC 1699
|||||||||||||||| | |||||||||||||| |||||||| ||||| || || ||||
Sbjct 1643 TATTACTTGACCAGCATTTTGTCAGCAAGATTTCCGATGTTGGCTTGGCCAGACTCGTCC 1702
Query 1700 CTCCCA-CAATTGATGACA-TCGCAACGCATTATAGAATGACATCCACTGCTGGAACATT 1757
|||| | | ||| ||||| | ||||| || |||||||||||||| || |||||||||||
Sbjct 1703 CTCC-ATCTGTTGCTGACACT-GCAACCCAATATAGAATGACATCAACCGCTGGAACATT 1760
Query 1758 GTGTTACATTGATCCAGAATACCAGCAAACTGGTATGCTTGGA-ACCAAATCAGACATAT 1816
|||||||| |||||||| || ||||| || |||||| |||| || ||||||||||| |
Sbjct 1761 CTGTTACATAGATCCAGAGTATCAGCAGACCGGTATG-TTGGGGACTAAATCAGACATTT 1819
Query 1817 ACTCATTTGGGATTGTGCTCTTGCAAATACTTACAGCAAAGACACCAATGGGTTTGACAA 1876
| || || || ||| |||| ||||||||| ||||||| ||| ||||||||||||||||
Sbjct 1820 ATTCGTTCGGCATTATGCTTTTGCAAATAATTACAGCTAAGCCACCAATGGGTTTGACTC 1879
Query 1877 ATCAAGTTGAGAA-AGCAATTGAGGAAGGAAATTTT-GCCAAGATACTT-GACCCT-CTT 1932
|||| || || || |||||| || |||| || ||| || |||| || |||||| ||
Sbjct 1880 ATCACGTCGA-AAGAGCAATCGAA-AAGGGAACTTTCGCTGAGATG-TTAGACCCTGCT- 1935
Query 1933 GTTACTGATTGGCCAATTGAAGAGGCTTTAATATT-AGCAAAAATCGGTTTACAATGCGC 1991
||| |||| |||||| | |||||||| || | | ||||||| | | | || |||| ||
Sbjct 1936 GTTCCTGACTGGCCAGTCGAAGAGGCCTTGGT-TGCAGCAAAACTTGCTCTAAAATGTGC 1994
Query 1992 AGAGTTAAGACGGAAAGATAGACCTGACTT-GGGAACGGTTGTGTTGCCTGGGCTGAA-A 2049
||| |||||||| ||||| ||||||||||| ||||| | |||| ||||||| ||| || |
Sbjct 1995 AGAATTAAGACGCAAAGACAGACCTGACTTAGGGAATG-TTGTTTTGCCTGAGCTTAACA 2053
Query 2050 AGGCTCATGAATTTAGCAGAAGAAAACAT 2078
| |||| | || |||| ||||||| |||
Sbjct 2054 AA-CTCAGGGATGTAGCCGAAGAAAGCAT 2081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79113438865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5