BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07030.1
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942615 jgi|Araly1|942615|scaffold_603159.1 207 1e-52
> Ahg942615 jgi|Araly1|942615|scaffold_603159.1
Length=349
Score = 207 bits (112), Expect = 1e-52
Identities = 202/242 (83%), Gaps = 19/242 (8%)
Strand=Plus/Minus
Query 1 ATGAATAGACAAAGGAGAAAGCTTCCAATTCGAAGAGATGGTGAAGCCCAAATTCAACGT 60
|||||||||| |||||||||||||||||||||||| |||||| || |||||||| ||| |
Sbjct 242 ATGAATAGACGAAGGAGAAAGCTTCCAATTCGAAGGGATGGTAAATCCCAAATTGAACCT 183
Query 61 GAGGGAATTGAAGCCA---ATCATGTTGCACCCGAAATAGTTGGAGGCGATGGAGTTGCA 117
||| || |||||||| |||| | || | |||||||||||||||||||||||||||||
Sbjct 182 GAGAGAGTTGAAGCCGCTGATCAAGATGAATCCGAAATAGTTGGAGGCGATGGAGTTGCA 123
Query 118 A--A--G------C-G----TGGAGTTGCAGAAGATGGAGATATAGGTGATGGAGTTGTA 162
| | | | | |||||||||||||||||||| ||||||||||||||||| |
Sbjct 122 AGCAACGGGGTTGCAGAGCGTGGAGTTGCAGAAGATGGAGGTATAGGTGATGGAGTTGCA 63
Query 163 GAGGAGATAGTAAATGAGGAGGGAGAAGGATATGAT-CTCATGATTCTAGTGTTGATGAA 221
|||||||||||||| ||||||| || ||| |||||| ||||||||||||||||| | |||
Sbjct 62 GAGGAGATAGTAAACGAGGAGGAAGTAGGCTATGATTCTCATGATTCTAGTGTTTACGAA 3
Query 222 GA 223
||
Sbjct 2 GA 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43002650376
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5