BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G07030.1 Length=1153 Score E Sequences producing significant alignments: (Bits) Value Ahg942615 jgi|Araly1|942615|scaffold_603159.1 207 1e-52 > Ahg942615 jgi|Araly1|942615|scaffold_603159.1 Length=349 Score = 207 bits (112), Expect = 1e-52 Identities = 202/242 (83%), Gaps = 19/242 (8%) Strand=Plus/Minus Query 1 ATGAATAGACAAAGGAGAAAGCTTCCAATTCGAAGAGATGGTGAAGCCCAAATTCAACGT 60 |||||||||| |||||||||||||||||||||||| |||||| || |||||||| ||| | Sbjct 242 ATGAATAGACGAAGGAGAAAGCTTCCAATTCGAAGGGATGGTAAATCCCAAATTGAACCT 183 Query 61 GAGGGAATTGAAGCCA---ATCATGTTGCACCCGAAATAGTTGGAGGCGATGGAGTTGCA 117 ||| || |||||||| |||| | || | ||||||||||||||||||||||||||||| Sbjct 182 GAGAGAGTTGAAGCCGCTGATCAAGATGAATCCGAAATAGTTGGAGGCGATGGAGTTGCA 123 Query 118 A--A--G------C-G----TGGAGTTGCAGAAGATGGAGATATAGGTGATGGAGTTGTA 162 | | | | | |||||||||||||||||||| ||||||||||||||||| | Sbjct 122 AGCAACGGGGTTGCAGAGCGTGGAGTTGCAGAAGATGGAGGTATAGGTGATGGAGTTGCA 63 Query 163 GAGGAGATAGTAAATGAGGAGGGAGAAGGATATGAT-CTCATGATTCTAGTGTTGATGAA 221 |||||||||||||| ||||||| || ||| |||||| ||||||||||||||||| | ||| Sbjct 62 GAGGAGATAGTAAACGAGGAGGAAGTAGGCTATGATTCTCATGATTCTAGTGTTTACGAA 3 Query 222 GA 223 || Sbjct 2 GA 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43002650376 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5