BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G07040.1 Length=2209 Score E Sequences producing significant alignments: (Bits) Value Ahg480229 jgi|Araly1|480229|fgenesh2_kg.3__2930__AT2G07040.1 3073 0.0 > Ahg480229 jgi|Araly1|480229|fgenesh2_kg.3__2930__AT2G07040.1 Length=2170 Score = 3073 bits (1664), Expect = 0.0 Identities = 2024/2195 (92%), Gaps = 36/2195 (2%) Strand=Plus/Plus Query 15 TCATCTCCAGAGACTCTCCTTCCATCTACCCTTAGAGGGCGCGCCTCCCGTGCGCCTTC- 73 ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| Sbjct 1 TCATCTCCAGAGACTCTCCTTGCATCTTCCTTTAGAGGGCGCGCCTCCCGTGCGCCTTCT 60 Query 74 TTAACTGGTTATGGAATCCAAATGTCTCATGTTCGTTTCCATTGTATCTGTCTTCTTCAT 133 |||||||||||||||||||| |||| || | ||| |||||||||||||| |||||||| | Sbjct 61 TTAACTGGTTATGGAATCCACATGTTTCCTCTTCTTTTCCATTGTATCTATCTTCTTCGT 120 Query 134 GGTTGTTAATGGCGTATCAGAGACCGAAACTCTCTTGAAATTCAAGAATTCTCTTGTTAT 193 || || | ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 121 GGCTGCTCATGGCTTATCAGAGACCGAATCTCTCTTGAAATTCAAGAATTCTCTTGTTAT 180 Query 194 TGGGAGAGCAAATGCTTTGGAGAGCTGGAATAGAAGGAATCCTCCATGCAAATGGACTGG 253 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 181 TGGGAGAGCAAATGCTTTGGAGAGCTGGAATAGAAGTAATCCTCCATGCAAATGGACTGG 240 Query 254 TGTCTTGTGTGATAGAGGCTTTGTTTGGGGGTTACGACTAGAGAATCTTGAGCTCTCTGG 313 |||||||||||||||||||||||||||||| ||||||||||||| | ||||| |||| || Sbjct 241 TGTCTTGTGTGATAGAGGCTTTGTTTGGGGATTACGACTAGAGACTTTTGAGATCTCCGG 300 Query 314 CTCTATCGACATCGAGGCGTTGATGGGTTTGAATTCTCTAAGGTCTCTTAGTTTCATAAA 373 |||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||||| Sbjct 301 CTCTATAGACATCGAGGCGTTGATGGATTTGAAGTCTCTAAGGTCTCTTAGCTTCATAAA 360 Query 374 CAACAAATTTAAAGGTCCATTTCCAGAGTTCAAGAAACTTGTTGCTTTGAAATCACTTTA 433 ||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 361 CAACAAACTTAGAGGTCCATTTCCAGAGTTCAAAAAACTTGTTGCTTTGAAATCACTTTA 420 Query 434 CTTGTCAAACAATCAATTCGACCTAGAGATACCTAAGGATGCATTTGATGGCATGGGGTG 493 |||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||| Sbjct 421 CTTGTCAAACAATCAATTCGACGTAAAGATACCTAAGGATGCATTTGATGGGATGGGGTG 480 Query 494 GTTGAAAAAACTTCATCTGGAGCAA-AATAATTTTATTGGTGAAATTCCAACGTCCTTGG 552 |||||||||||| ||||||||| || ||||| |||| |||||||||||||||||| |||| Sbjct 481 GTTGAAAAAACTCCATCTGGAG-AACAATAAGTTTAGTGGTGAAATTCCAACGTCTTTGG 539 Query 553 TCAAAAGTCCAAAGCTTATAGAGCTTAGACTTGACGGGAACCGGTTCACCGGACAAATAC 612 |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 540 TCAAAAGTCCTAAGCTTTTAGAGCTTAGACTTGACGGGAACCGGTTCACTGGACAAATAC 599 Query 613 CAGAATTCAGACATCATCCAAACATGTTAAACCTTTCAAACAATGCATTGGCAGGTCAAA 672 | ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 600 CGGAATTCACACATCAACCACACATGTTAAACCTTTCAAACAATGCATTGGCAGGTCAAA 659 Query 673 TCCCAAATAGTT-TCAGTACAATGGATCCAAAATTGTTTGAAGGGAATAAAGGCTTATGT 731 ||||||||| || |||||||||||||| |||||||||||||||| || |||||||||||| Sbjct 660 TCCCAAATA-TTCTCAGTACAATGGATTCAAAATTGTTTGAAGGAAACAAAGGCTTATGT 718 Query 732 GGAAAACCTTTGGATACAAAGTGTTCTTCTCCTTACAACCATTCCTCGGAACCCAAGTCG 791 || ||||||||||||||||||||| ||||| ||||||| | |||| | || || ||||| Sbjct 719 GGGAAACCTTTGGATACAAAGTGTACTTCTTCTTACAATCTTTCCCCAGAGCCTAAGTCA 778 Query 792 AGCACCAAGAAAACATCATCAAAGTTTTTGTACATTGTAGCTGCAGC-AGTAGCAGCACT 850 ||| ||||||||| ||||| |||||||||||||||||||||| ||| | ||| |||||| Sbjct 779 AGCCCCAAGAAAAAATCATTTAAGTTTTTGTACATTGTAGCTGTAGCGA-TAGTAGCACT 837 Query 851 AGCTGCATCACTCATAATTATTGGAGTGGTCATCTTCCTT-ATCCGAAGACGAAAGAAGA 909 ||||||| |||| ||||||||||| || ||||||||||| | ||| ||||||| |||| Sbjct 838 GGCTGCATTACTCGTAATTATTGGATTGATCATCTTCCTTTA-CCGGAGACGAACTAAGA 896 Query 910 AACAACCATTATTGTCAGCAGAACCAGGACCATCAAGTCTACAAATGAGAGCTGGAATCC 969 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 897 AACAACCACTATTGTCAGCAGAACCTGGACCATCAAGTCTACAAATGAGAGCTGGAATCC 956 Query 970 AAGAAAGTGAAAGGGGACAAGGTAGCTACCATTCACAAAACCGTGCTGCTAAAAAGATGA 1029 |||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| Sbjct 957 AAGAAAGTGAAAGGGGACAAAGTAGCTACCATTCACAAAACCGCGCTGCAAAAAAGATGA 1016 Query 1030 TTCATACCACAAAATTGTCATTTTTGAGAGATGACAAGGGGAAATTTGAGTTGCAAGATT 1089 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1017 TTCATACCACAAAATTGTCATTTTTGAGGGATGACAAGGGAAAATTTGAGTTGCAAGATT 1076 Query 1090 TATTGAAAGCATCAGCAGAGATTCTAGGAAGTGGATGTTTTGGAGCTTCGTATAAGACAT 1149 ||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1077 TATTGAAAGCATCGGCAGAGATTCTAGGAAGTGGATGTTTCGGAGCATCGTATAAGACAC 1136 Query 1150 TGCTTTCGAACGGATCGGTGATGGTAGTGAAGAGGTTTAAACATATGAATA-GTGCAGGA 1208 |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| Sbjct 1137 TGCTTTCGAACGGATCAGTGATGGTAGTGAAGAGGTTTAAACATATGAATAAG-GCAGGA 1195 Query 1209 ATTGATGAGTTCCAAGAACACATGAAAAGGTTGGGGAGGTTAAACCATGAGAATTTGCTC 1268 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1196 ATTGAAGAGTTCCAAGAACACATGAAGAGGTTGGGGAGGTTAAACCATGAGAATTTGCTC 1255 Query 1269 CCAATTGTTGCTTATTACTACAAAAAAGAGGAAAAGCTTTTTGTTTCCGATTTTGTTGCA 1328 || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1256 CCCATTGTGGCTTATTACTATAAAAAAGAGGAAAAGCTTTTTGTTTCCGATTTTGTTGCG 1315 Query 1329 AATGGAAGCTTGGCTGCTCATCTCCATGGTCATAAATCCCTAGGGCAACCAAGCTTGGAT 1388 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1316 AATGGAAGCTTGGCTGCTCATCTACATGGTCATAAATCTTTAGGGCAACCAAGCTTGGAT 1375 Query 1389 TGGCCAACAAGATTCAATATTGTGAAAGGTGTAGGAAGGGGACTTTTATACCTCCACAAA 1448 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1376 TGGCCAACAAGATTGAATATTGTGAAAGGTGTAGGAAGGGGACTTTTATACCTCAACAAA 1435 Query 1449 AACCTACCTAGCCTAATGGCTCCTCATGGTCATCTAAAATCATCTAATGTTCTTCTAAGT 1508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1436 AACCTACCTAGCCTAATGGCTCCTCATGGTCATCTAAAATCATCTAATGTTCTTCTCAGT 1495 Query 1509 GAGAAATTTGAGCCTCTTCTTATGGACTATGGTTTAATCCCAATGATCAACGAAGAAAGC 1568 |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 1496 GAGAAATTTGAGCCTCTTCTTATGGACTATGGCTTGATCCCAATGATCAACGAAGAGAGC 1555 Query 1569 GCGCAAGAGCTCATGGTGGCTTACAAATCCCCAGAGTACGTAAAACAAAGCCGTGTGACC 1628 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1556 GCGCAAGAGCTCATGGTGGCTTACAAATCCCCAGAGTACTTAAAACAAAACCGTGTGACC 1615 Query 1629 AAGAAAACCGATGTTTGGGGGCTAGGTGTACTCATCTTGGAGATTCTTACGGGAAAGTTA 1688 ||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||| Sbjct 1616 AAGAAAACCGATGTTTGGGGGCTCGGGGTACTAATCTTGGAGATTCTTACAGGAAAGTTA 1675 Query 1689 CTTGAAAGTTTCTCACAAGTGGATAAAGAAAGCGAGGAGGACCTAGCGAGCTGGGTAAGG 1748 | |||||||||| | ||| | |||||||||||||||||||||||||| |||||||| ||| Sbjct 1676 CCTGAAAGTTTCCCGCAAATCGATAAAGAAAGCGAGGAGGACCTAGCCAGCTGGGTGAGG 1735 Query 1749 TCTA-GTTTTAAAGGAGAGTGGACACAAGAATTGTTTGATCAAGAAATGGGGAAAACAAG 1807 || | |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 1736 TCGATGTTT-AAAGGAGAGTGGACACAGGAATTGTTTGATCAAGAAATGGGGACAACAAG 1794 Query 1808 CAATTGTGAAGCACATATACTCAATCTCATGAGAATTGGATTGAGTTGTTGTGAAGTAGA 1867 |||||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||| Sbjct 1795 CAATTGTGAAGCACATATACTCAAACTCTTGAAAATTGGACTGAGTTGTTGTGAAGTAGA 1854 Query 1868 TGTGGAGAAAAGGTTAGATATAAGAGAGGCTGTTGAGAAGATGGAAGATTTGATGAAGGA 1927 |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 1855 TGTGGAGAAAAGGTTAGATATAAGAGAGGCTGTTGAGAAGATAGAAGATATGATGAAGGA 1914 Query 1928 GAGAGAACAAGGAGATGATGACTTTTACTCAACATATGCGAGTGAAGCTGATGGGAGATC 1987 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1915 GAGAGAACAAGGAGATGATGACTTCTACTCAACATATGCGAGTGAAGCTGATGGGAGATC 1974 Query 1988 GTCGAGGGGACTATCAAGTGAGGGAATTAACTTGTCATGAAAAGTAAATCGACAAGCTAT 2047 ||||||||| | |||||||||||||||||||||||||||||| | || | || Sbjct 1975 ATCGAGGGGAGTGTCAAGTGAGGGAATTAACTTGTCATGAAAA-T-----GA---G--AT 2023 Query 2048 CAAGTAAACTTTTCATGCAAAAGTTGT--CTTAAAACCGCAACTTGCTTGGAGC-TAATT 2104 | | || ||||||||||| |||||| ||||||||| ||||||| ||||| | ||||| Sbjct 2024 CGAC-AA--TTTTCATGCAAGAGTTGTGTCTTAAAACCACAACTTGGTTGGA-CATAATT 2079 Query 2105 GATGTCGACACTTCAATATACGGAATCCCCCTTTATAAGTAGAAAAA-GTTGGTTTTGCG 2163 ||||||||||| ||||||||||| ||||| || | | ||||||||| |||||||||| | Sbjct 2080 GATGTCGACACCTCAATATACGGGATCCC--TT-A-ACGTAGAAAAAAGTTGGTTTTGAG 2135 Query 2164 TTAACGTGTGATATTATTTTGGGAATTTCATCTGC 2198 || ||||||||| ||||| ||||||||| |||||| Sbjct 2136 TTGACGTGTGATGTTATTGTGGGAATTTTATCTGC 2170 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83151004835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5