BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07040.1
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480229 jgi|Araly1|480229|fgenesh2_kg.3__2930__AT2G07040.1 3073 0.0
> Ahg480229 jgi|Araly1|480229|fgenesh2_kg.3__2930__AT2G07040.1
Length=2170
Score = 3073 bits (1664), Expect = 0.0
Identities = 2024/2195 (92%), Gaps = 36/2195 (2%)
Strand=Plus/Plus
Query 15 TCATCTCCAGAGACTCTCCTTCCATCTACCCTTAGAGGGCGCGCCTCCCGTGCGCCTTC- 73
||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1 TCATCTCCAGAGACTCTCCTTGCATCTTCCTTTAGAGGGCGCGCCTCCCGTGCGCCTTCT 60
Query 74 TTAACTGGTTATGGAATCCAAATGTCTCATGTTCGTTTCCATTGTATCTGTCTTCTTCAT 133
|||||||||||||||||||| |||| || | ||| |||||||||||||| |||||||| |
Sbjct 61 TTAACTGGTTATGGAATCCACATGTTTCCTCTTCTTTTCCATTGTATCTATCTTCTTCGT 120
Query 134 GGTTGTTAATGGCGTATCAGAGACCGAAACTCTCTTGAAATTCAAGAATTCTCTTGTTAT 193
|| || | ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 GGCTGCTCATGGCTTATCAGAGACCGAATCTCTCTTGAAATTCAAGAATTCTCTTGTTAT 180
Query 194 TGGGAGAGCAAATGCTTTGGAGAGCTGGAATAGAAGGAATCCTCCATGCAAATGGACTGG 253
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TGGGAGAGCAAATGCTTTGGAGAGCTGGAATAGAAGTAATCCTCCATGCAAATGGACTGG 240
Query 254 TGTCTTGTGTGATAGAGGCTTTGTTTGGGGGTTACGACTAGAGAATCTTGAGCTCTCTGG 313
|||||||||||||||||||||||||||||| ||||||||||||| | ||||| |||| ||
Sbjct 241 TGTCTTGTGTGATAGAGGCTTTGTTTGGGGATTACGACTAGAGACTTTTGAGATCTCCGG 300
Query 314 CTCTATCGACATCGAGGCGTTGATGGGTTTGAATTCTCTAAGGTCTCTTAGTTTCATAAA 373
|||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 301 CTCTATAGACATCGAGGCGTTGATGGATTTGAAGTCTCTAAGGTCTCTTAGCTTCATAAA 360
Query 374 CAACAAATTTAAAGGTCCATTTCCAGAGTTCAAGAAACTTGTTGCTTTGAAATCACTTTA 433
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 CAACAAACTTAGAGGTCCATTTCCAGAGTTCAAAAAACTTGTTGCTTTGAAATCACTTTA 420
Query 434 CTTGTCAAACAATCAATTCGACCTAGAGATACCTAAGGATGCATTTGATGGCATGGGGTG 493
|||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 421 CTTGTCAAACAATCAATTCGACGTAAAGATACCTAAGGATGCATTTGATGGGATGGGGTG 480
Query 494 GTTGAAAAAACTTCATCTGGAGCAA-AATAATTTTATTGGTGAAATTCCAACGTCCTTGG 552
|||||||||||| ||||||||| || ||||| |||| |||||||||||||||||| ||||
Sbjct 481 GTTGAAAAAACTCCATCTGGAG-AACAATAAGTTTAGTGGTGAAATTCCAACGTCTTTGG 539
Query 553 TCAAAAGTCCAAAGCTTATAGAGCTTAGACTTGACGGGAACCGGTTCACCGGACAAATAC 612
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 TCAAAAGTCCTAAGCTTTTAGAGCTTAGACTTGACGGGAACCGGTTCACTGGACAAATAC 599
Query 613 CAGAATTCAGACATCATCCAAACATGTTAAACCTTTCAAACAATGCATTGGCAGGTCAAA 672
| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 600 CGGAATTCACACATCAACCACACATGTTAAACCTTTCAAACAATGCATTGGCAGGTCAAA 659
Query 673 TCCCAAATAGTT-TCAGTACAATGGATCCAAAATTGTTTGAAGGGAATAAAGGCTTATGT 731
||||||||| || |||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 660 TCCCAAATA-TTCTCAGTACAATGGATTCAAAATTGTTTGAAGGAAACAAAGGCTTATGT 718
Query 732 GGAAAACCTTTGGATACAAAGTGTTCTTCTCCTTACAACCATTCCTCGGAACCCAAGTCG 791
|| ||||||||||||||||||||| ||||| ||||||| | |||| | || || |||||
Sbjct 719 GGGAAACCTTTGGATACAAAGTGTACTTCTTCTTACAATCTTTCCCCAGAGCCTAAGTCA 778
Query 792 AGCACCAAGAAAACATCATCAAAGTTTTTGTACATTGTAGCTGCAGC-AGTAGCAGCACT 850
||| ||||||||| ||||| |||||||||||||||||||||| ||| | ||| ||||||
Sbjct 779 AGCCCCAAGAAAAAATCATTTAAGTTTTTGTACATTGTAGCTGTAGCGA-TAGTAGCACT 837
Query 851 AGCTGCATCACTCATAATTATTGGAGTGGTCATCTTCCTT-ATCCGAAGACGAAAGAAGA 909
||||||| |||| ||||||||||| || ||||||||||| | ||| ||||||| ||||
Sbjct 838 GGCTGCATTACTCGTAATTATTGGATTGATCATCTTCCTTTA-CCGGAGACGAACTAAGA 896
Query 910 AACAACCATTATTGTCAGCAGAACCAGGACCATCAAGTCTACAAATGAGAGCTGGAATCC 969
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 897 AACAACCACTATTGTCAGCAGAACCTGGACCATCAAGTCTACAAATGAGAGCTGGAATCC 956
Query 970 AAGAAAGTGAAAGGGGACAAGGTAGCTACCATTCACAAAACCGTGCTGCTAAAAAGATGA 1029
|||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 957 AAGAAAGTGAAAGGGGACAAAGTAGCTACCATTCACAAAACCGCGCTGCAAAAAAGATGA 1016
Query 1030 TTCATACCACAAAATTGTCATTTTTGAGAGATGACAAGGGGAAATTTGAGTTGCAAGATT 1089
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1017 TTCATACCACAAAATTGTCATTTTTGAGGGATGACAAGGGAAAATTTGAGTTGCAAGATT 1076
Query 1090 TATTGAAAGCATCAGCAGAGATTCTAGGAAGTGGATGTTTTGGAGCTTCGTATAAGACAT 1149
||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1077 TATTGAAAGCATCGGCAGAGATTCTAGGAAGTGGATGTTTCGGAGCATCGTATAAGACAC 1136
Query 1150 TGCTTTCGAACGGATCGGTGATGGTAGTGAAGAGGTTTAAACATATGAATA-GTGCAGGA 1208
|||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1137 TGCTTTCGAACGGATCAGTGATGGTAGTGAAGAGGTTTAAACATATGAATAAG-GCAGGA 1195
Query 1209 ATTGATGAGTTCCAAGAACACATGAAAAGGTTGGGGAGGTTAAACCATGAGAATTTGCTC 1268
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1196 ATTGAAGAGTTCCAAGAACACATGAAGAGGTTGGGGAGGTTAAACCATGAGAATTTGCTC 1255
Query 1269 CCAATTGTTGCTTATTACTACAAAAAAGAGGAAAAGCTTTTTGTTTCCGATTTTGTTGCA 1328
|| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CCCATTGTGGCTTATTACTATAAAAAAGAGGAAAAGCTTTTTGTTTCCGATTTTGTTGCG 1315
Query 1329 AATGGAAGCTTGGCTGCTCATCTCCATGGTCATAAATCCCTAGGGCAACCAAGCTTGGAT 1388
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1316 AATGGAAGCTTGGCTGCTCATCTACATGGTCATAAATCTTTAGGGCAACCAAGCTTGGAT 1375
Query 1389 TGGCCAACAAGATTCAATATTGTGAAAGGTGTAGGAAGGGGACTTTTATACCTCCACAAA 1448
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1376 TGGCCAACAAGATTGAATATTGTGAAAGGTGTAGGAAGGGGACTTTTATACCTCAACAAA 1435
Query 1449 AACCTACCTAGCCTAATGGCTCCTCATGGTCATCTAAAATCATCTAATGTTCTTCTAAGT 1508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1436 AACCTACCTAGCCTAATGGCTCCTCATGGTCATCTAAAATCATCTAATGTTCTTCTCAGT 1495
Query 1509 GAGAAATTTGAGCCTCTTCTTATGGACTATGGTTTAATCCCAATGATCAACGAAGAAAGC 1568
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 1496 GAGAAATTTGAGCCTCTTCTTATGGACTATGGCTTGATCCCAATGATCAACGAAGAGAGC 1555
Query 1569 GCGCAAGAGCTCATGGTGGCTTACAAATCCCCAGAGTACGTAAAACAAAGCCGTGTGACC 1628
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1556 GCGCAAGAGCTCATGGTGGCTTACAAATCCCCAGAGTACTTAAAACAAAACCGTGTGACC 1615
Query 1629 AAGAAAACCGATGTTTGGGGGCTAGGTGTACTCATCTTGGAGATTCTTACGGGAAAGTTA 1688
||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||
Sbjct 1616 AAGAAAACCGATGTTTGGGGGCTCGGGGTACTAATCTTGGAGATTCTTACAGGAAAGTTA 1675
Query 1689 CTTGAAAGTTTCTCACAAGTGGATAAAGAAAGCGAGGAGGACCTAGCGAGCTGGGTAAGG 1748
| |||||||||| | ||| | |||||||||||||||||||||||||| |||||||| |||
Sbjct 1676 CCTGAAAGTTTCCCGCAAATCGATAAAGAAAGCGAGGAGGACCTAGCCAGCTGGGTGAGG 1735
Query 1749 TCTA-GTTTTAAAGGAGAGTGGACACAAGAATTGTTTGATCAAGAAATGGGGAAAACAAG 1807
|| | |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1736 TCGATGTTT-AAAGGAGAGTGGACACAGGAATTGTTTGATCAAGAAATGGGGACAACAAG 1794
Query 1808 CAATTGTGAAGCACATATACTCAATCTCATGAGAATTGGATTGAGTTGTTGTGAAGTAGA 1867
|||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||||
Sbjct 1795 CAATTGTGAAGCACATATACTCAAACTCTTGAAAATTGGACTGAGTTGTTGTGAAGTAGA 1854
Query 1868 TGTGGAGAAAAGGTTAGATATAAGAGAGGCTGTTGAGAAGATGGAAGATTTGATGAAGGA 1927
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1855 TGTGGAGAAAAGGTTAGATATAAGAGAGGCTGTTGAGAAGATAGAAGATATGATGAAGGA 1914
Query 1928 GAGAGAACAAGGAGATGATGACTTTTACTCAACATATGCGAGTGAAGCTGATGGGAGATC 1987
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1915 GAGAGAACAAGGAGATGATGACTTCTACTCAACATATGCGAGTGAAGCTGATGGGAGATC 1974
Query 1988 GTCGAGGGGACTATCAAGTGAGGGAATTAACTTGTCATGAAAAGTAAATCGACAAGCTAT 2047
||||||||| | |||||||||||||||||||||||||||||| | || | ||
Sbjct 1975 ATCGAGGGGAGTGTCAAGTGAGGGAATTAACTTGTCATGAAAA-T-----GA---G--AT 2023
Query 2048 CAAGTAAACTTTTCATGCAAAAGTTGT--CTTAAAACCGCAACTTGCTTGGAGC-TAATT 2104
| | || ||||||||||| |||||| ||||||||| ||||||| ||||| | |||||
Sbjct 2024 CGAC-AA--TTTTCATGCAAGAGTTGTGTCTTAAAACCACAACTTGGTTGGA-CATAATT 2079
Query 2105 GATGTCGACACTTCAATATACGGAATCCCCCTTTATAAGTAGAAAAA-GTTGGTTTTGCG 2163
||||||||||| ||||||||||| ||||| || | | ||||||||| |||||||||| |
Sbjct 2080 GATGTCGACACCTCAATATACGGGATCCC--TT-A-ACGTAGAAAAAAGTTGGTTTTGAG 2135
Query 2164 TTAACGTGTGATATTATTTTGGGAATTTCATCTGC 2198
|| ||||||||| ||||| ||||||||| ||||||
Sbjct 2136 TTGACGTGTGATGTTATTGTGGGAATTTTATCTGC 2170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83151004835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5