BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07080.1
Length=2589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg947170 jgi|Araly1|947170|scaffold_703399.1 1027 0.0
> Ahg947170 jgi|Araly1|947170|scaffold_703399.1
Length=1717
Score = 1027 bits (556), Expect = 0.0
Identities = 626/658 (95%), Gaps = 12/658 (2%)
Strand=Plus/Minus
Query 1943 CCGCAAAAAAGATGATTCATTCGGATCAACATGAAAGCCCAACTACATTGCCAG-A---A 1998
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1541 CCGCGAAAAAGATGATTCATTCGGATCAACATGAAAGCCCAACTACATTGCCAGAATTCA 1482
Query 1999 T-TTATATATTGGAAAGAGGTTTGCCTACTTGCTTCTATGGTATAATCCTCTTCCCGCGG 2057
| ||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |
Sbjct 1481 TGTTATATATTGGAAAGAGGTTTACCTCCTTGCTTCTATGGTACAATCCTCTTCCCGCTG 1422
Query 2058 AGCCTCCTTTCTTCTCGGTCCGCAGAGACAAAATGTAGGACTGGTGCCAACAGTTAATCA 2117
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1421 AGCCTCCTTTCTTCTCGGTCCACAGAGACAAAATGTAGGACTGGTGCCAACAGTTAATCA 1362
Query 2118 CGGAAGAAAGGACTCACTGCGCCAAGAT--C--ACT-A-ACTAATCTAATAGAATAGAAA 2171
|||||||||||||||||||||||||||| | ||| | |||||||||||||||||||||
Sbjct 1361 CGGAAGAAAGGACTCACTGCGCCAAGATCACTAACTAATACTAATCTAATAGAATAGAAA 1302
Query 2172 ACCCTAATATAATAGAAAAGAAAAGAACTGTCTTTTCTTTATACTTATGTATACTTTCCC 2231
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1301 ATCCTAATATAATAGAAAAGAAAAGAACTGTCTTTTCTGTATACTTATGTATACTTTCCC 1242
Query 2232 CGGTTTCGTTGCTACTGCGGGCTTTACGCAATTGATCGGATCATCTAGATATCCCTTCAA 2291
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1241 CGGTTCCGTTGCTACTGCGGGCTTTACGCAATCGATCGGATCATCTAGATATCCCTTCAA 1182
Query 2292 CACAACATAGGTCGTCGAAAGGATCTCGGAGACCTGCCAAAGCACGAAAGCCAAAATCTT 2351
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1181 CACAACATAGGTCGTCGAAAGGATCTCGGAGACCCGCCAAAGCACGAAAGCCAGGATCTT 1122
Query 2352 TCAGAAAATGAATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCC 2411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TCAGAAAATGAATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCC 1062
Query 2412 GCCAATTTGGGATCCAATTCGGAATTTTCCTTGAGGGATATTGGTAAGGAATTGGAATGT 2471
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1061 GTCAATTTGGGATCCAATTCGGGATTTTCCTTGAGGGATATTGGTAAGGAATTGGAATGT 1002
Query 2472 AATAATATCGATTCATAATGGATTCATATCGATACATAAGACAAGGTTCTCTATCGATTC 2531
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1001 AATAATATCGATTCATAATGGATTCATATCGATACAGAAGAAAAGGTTCTCTATCGATTC 942
Query 2532 AACAAGTGTTGTACTTATGGGAAAGCGATAGAGAAAGAGaaaaaaaaaCAAAGATTTC 2589
|||||||| ||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 941 AACAAGTGCTGTACTTCTGGGAAAGCGATAGAGAAAGAGAAAAAAAA-CGAAGATTTC 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97625297935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5