BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07180.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480233 jgi|Araly1|480233|fgenesh2_kg.3__2934__AT2G07180.1 2444 0.0
> Ahg480233 jgi|Araly1|480233|fgenesh2_kg.3__2934__AT2G07180.1
Length=1667
Score = 2444 bits (1323), Expect = 0.0
Identities = 1579/1698 (93%), Gaps = 35/1698 (2%)
Strand=Plus/Plus
Query 39 tctctctttctccgacctcctccgagaaacccatctctcctcctccATTTTTGCCCTTGG 98
||||||| |||||||||||||||||||||||||||||| || ||| | ||
Sbjct 1 TCTCTCTCTCTCCGACCTCCTCCGAGAAACCCATCTCT-CT--TCC-----T--CC---- 46
Query 99 AGTTTCATCAGCAAGTTTCTCGGAGTCTCGTCGGAGAGATCGGAGttttttttttttttt 158
| ||| |||||| ||||||||||||||||||| | |||||||||| |||||||||
Sbjct 47 A-TTTTATCAGCCAGTTTCTCGGAGTCTCGTC-G-GAGATCGGAG----CTTTTTTTTTC 99
Query 159 tttCCTGGATCTGTCGACTATGTGATGGGAATCCAATAACAGAGAACGCAGAGAGAG-TG 217
||| ||||||||||||| |||||||||||||| |||| |||| ||||| ||||||| |
Sbjct 100 TTT-GTGGATCTGTCGACAATGTGATGGGAATCGAATAGCAGATAACGC-GAGAGAGTTT 157
Query 218 TTTTCGGATGGGGATTTGCTTTAGCGCTGAAGATCAGCACTACCAATTTTCTCAACAACA 277
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 158 TTTTCGGATGGGGATTTGCTTTAGCGCTGAAGATCAGCAGTACCAATTTTCTCAACAACA 217
Query 278 AAACTATCCTAAGAAAACAACTCCAGGGAAAAAAGCAGCAGTGTATCTAATGAAGTCAGA 337
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 218 AAACTATCAGAAGAAAACAACACCAGGGAAAAATTCAGCAGTGTATCTAATGAAGTCAGA 277
Query 338 TTGTGAAGATGT-AGTTGGTAAAGTGAGTGGAAGTGGAAGTGGTGGTGGTGGTTTGCCAT 396
|||| ||||| | ||||||||||||||||| |||| | ||||||||||||| ||||| |
Sbjct 278 TTGTCAAGAT-TCAGTTGGTAAAGTGAGTGCAAGT-G--GTGGTGGTGGTGGCTTGCCTT 333
Query 397 TGGCTCCAAAAAACATTAAAGATCTTCAATCAAATCCAGGATATGAAAATGTTGATATTT 456
||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 334 TGGCTCCTAAAAACATTAAAGATCTTCAGTCTAATCCAGGTTATGAAAATGTTGATATTT 393
Query 457 TCACTTACGAAGAGATGAAGATTGCTACTAAGCAGTTCAGGCCGGATTATATTCTCGGTG 516
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 394 TCACTTACCAAGAGATGAAGATTGCTACTAAGCAGTTCAGGCCTGATTATATTCTCGGCG 453
Query 517 AGGGAGGTTTCGGAGTGGTGTATAAAGGAGTTATAGATGAGTCTGTGAGGGTTGGTTTCA 576
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 454 AGGGAGGTTTCGGAGTGGTGTATAAAGGAGTTATAGATGAGTCTGTCAGGGCTGGTTACA 513
Query 577 AGTCTACAAAAGTTGCTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGT 636
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 514 AGTCTACAAAAGTTGCTATCAAAGAACTTAATCCAGAGGGCTTCCAGGGAGATAGAGAGT 573
Query 637 GGCTGGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTTATTG 696
||||||||||||||||||||||||||||||||||||||||||||||||| || || || |
Sbjct 574 GGCTGGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTTAAGCTCATAG 633
Query 697 GCTACTGCTGTGAAGATGATCATAGATTGTTAGTCTATGAATACATGGCAATGGGGAGCC 756
|||||||||||||||||||||| || || |||||||||||||| |||||||||||||| |
Sbjct 634 GCTACTGCTGTGAAGATGATCACAGGTTATTAGTCTATGAATATATGGCAATGGGGAG-C 692
Query 757 TT-GAGAAACATCTTTTCCGAAGAGTTGGATGCACTTTGACATGGACAAAAAGAATGAAG 815
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 693 TTGGAGAAACATCTTTTCCGAAGAGTTGGATGCACTTTGACATGGTCGAAAAGAATGAAG 752
Query 816 ATTGCGCTAGACGCAGCCAAGGGTCTTGCATTTCTTCATGGTGCTGAACGCTCCATCATA 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ATTGCGCTAGACGCAGCCAAGGGTCTTGCATTTCTTCATGGTGCTGAACGCTCCATCATA 812
Query 876 TACCGGGATCTGAAGACAGCAAATATATTGCTTGATGAGGGTTACAATGCTAAACTCTCT 935
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 813 TATCGGGATCTGAAGACAGCAAATATATTGCTGGATGAGGGTTACAATGCTAAACTCTCT 872
Query 936 GACTTTGGACTGGCAAAGGATGGTCCAAGAGGAGACCAAACACATGTGTCTACACGTGTT 995
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 873 GACTTTGGACTGGCAAAGGATGGTCCAAGAGGAGATCAAACACATGTGTCAACACGTGTT 932
Query 996 ATGGGGACTTACGGATACGCTGCTCCAGAGTATGTCATGACAGGGCATTTGACATCCAGA 1055
|||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 933 ATGGGGACTTACGGATACGCTGCTCCTGAGTATGTAATGACAGGACATTTGACATCCAGA 992
Query 1056 AGTGATGTGTATGGATTCGGTGTACTTCTCCTTGAGATGCTCCTTGGGAAGAGGGCAATG 1115
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 993 AGTGATGTTTATGGATTTGGAGTACTTCTCCTTGAGATGCTCCTTGGGAAGAGGGCGATG 1052
Query 1116 GACAAAAGCAGAGCTTGCAGGGAGCATAACTTGGTAGAGTGGGCACGACCTCTTTTGAAT 1175
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1053 GACAAAAGCAGACCTTGCAGGGAGCATAACTTGGTAGAGTGGGCACGACCACTATTGAAT 1112
Query 1176 CACAACAAAAAGCTTTTGAGGATCATAGACCCTCGAATGGATGGACAGTACGGCACTAAG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 CACAACAAAAAGCTTTTGAGGATCATAGACCCTCGAATGGATGGACAGTACGGCACTAAG 1172
Query 1236 GCGTTGATGAAAGTAGCTGGTTTGGCATACCAATGCCTAAGCCAAAACCCGAAAGGAAGG 1295
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1173 GCGTTGATGAAAGTAGCTGGTTTGGCATACCAATGCCTAAGTCAAAACCCGAAAGGAAGG 1232
Query 1296 CCTCTCATGAATCATGTTGTAGAAGTTCTTGAGACTCTCAAGGACGACGGAGATGCTCAG 1355
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1233 CCTCTCATGAATCATGTTGTAGAAGTTCTTGAGACTCTCAAGGAAGACGGAGATGCTCAG 1292
Query 1356 GAGGAAGTCATGACTAATCTTCATAGTAGGGGAAAGTCTGTAACCTTATATGAAGCTTCT 1415
|||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||
Sbjct 1293 GAGGAAGTCATGACTAATCTCCATAGCAGGGGCAAGTCCGTAACCTTATATGAAGCATCT 1352
Query 1416 AGCGATTCTCAAGGCACAAGAGATGG-GAATGGACAGAGGAGGAGAAGACCGGAAAGTGG 1474
|| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1353 AGTGATTCCCAAGGCACAAGAGATGGAGA-TGGACAGAGGAGGAGAAGACCGGAAAGTGG 1411
Query 1475 TAGAAGCAAGAGCGAAGCCGCGGTCGACACTGAAAAATATGTTTCTACTCTTTCGGAACC 1534
||||||||||||||||||| | || ||||| || |||||||||||| ||||||| |||||
Sbjct 1412 TAGAAGCAAGAGCGAAGCCTCAGTTGACACCGACAAATATGTTTCTGCTCTTTCAGAACC 1471
Query 1535 GGATACTACCAAAATTTAAGACTCAAGACAGAATGATTCACCAGTGATTTGAGACTGTAA 1594
|||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||
Sbjct 1472 GGATACTACCAAAATTTAAGACTCAAAACAGAAAGATTCACCGGTGATTTGAGACTGTAA 1531
Query 1595 GATAAGAAAGTAGCAGAGTTGGCTTAAAATGTATAAATAAGTTGAGTCTTCGTTTCGGGT 1654
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||
Sbjct 1532 GATAAGAAAGTAGCAGAGTTGGCTTAAA-TGTATAAATAAGTTGAGTCTTGGTTTTGGGA 1590
Query 1655 TCTTCTTCTTTTTGAATTACAAATATTAGTGCAATATGCAATTTGATGTTTCTTTGAAAT 1714
||||||| |||||| |||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1591 TCTTCTT-TTTTTGGATTACAAATATTAGTGCATTACACAATTTGATGTTTCTTTGAAAT 1649
Query 1715 TCAAATGAATTTTGGAGA 1732
||||||||||||||||||
Sbjct 1650 TCAAATGAATTTTGGAGA 1667
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5