BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07340.1

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480234 jgi|Araly1|480234|fgenesh2_kg.3__2935__AT2G07340.1         763    0.0  


> Ahg480234 jgi|Araly1|480234|fgenesh2_kg.3__2935__AT2G07340.1
Length=475

 Score =  763 bits (413),  Expect = 0.0
 Identities = 457/478 (96%), Gaps = 4/478 (1%)
 Strand=Plus/Plus

Query  16   TTTTTGACCCTAAAACGAAAGACCCTTCTCTAGCACGTCGGGGTTCGTTCAAAGATCAAG  75
            ||||| ||||||||||||||||||||||||||||||||||| ||| |    |||||||||
Sbjct  2    TTTTTCACCCTAAAACGAAAGACCCTTCTCTAGCACGTCGGAGTT-G--GGAAGATCAAG  58

Query  76   ATCTGCAGACATGGCGGACGAAGCAACCAGAGCTGCTTTTATGGAGATTCAAGCTAGCAT  135
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  59   ATCTGCAGACATGGCGGACGAAGCAACCAGAGCTGCTTTTATGGAGATTCAAGCAAGTAT  118

Query  136  GATTGAACTCACTGGGAAGCTCAAACAGGTGCAGAATCAGATGCGCAACAAAGAGGGAGA  195
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  119  GATTGAACTCACTGGGAAGCTGAAACAGGTGCAGAATCAGATGCGCAACAAAGAGGGAGA  178

Query  196  TAGAAAGCGAGCTTTCTTAACCTTGGAGGAGCTGAGGCCATTGCCTGAAGAGACAAACAC  255
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  179  TAGAAAGCGAGCTTTCTTAACCTTGGAGGAGCTGAGGCCATTGCCTGAGGATACAAACAC  238

Query  256  CTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACA  315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  CTACAAGTCAATAGGAAGAACGTTTGTTCTAGAGCCCAAGACAGTGCTGGAGGGTGAACA  298

Query  316  AGAGCAAAAACTCAAGGACAGTGAAGCTGCCGTTGCTTCTCTACAGACATCCAAGGAATA  375
            |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct  299  AGAGCAAAAACTCAAGGACAGTGAGGCTGCTGTTGCTTCTCTACAGACATCGAAGGAATA  358

Query  376  CTTGGAGAAGCAGGTAGCAGAGGTTGAGAACAACTTGAGGGAGCTGTTGCAGCAAGAACC  435
            |||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  359  CTTGGAGAAGCAGACAGCAGAGGTGGAGAACAACTTGAGGGAGCTGTTGCAGCAAGAACC  418

Query  436  GGGCATTGCTCAACAGATTATGTCCATGTCTATGTAACTTTTGTATTATCCCAAACCT  493
            |||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||
Sbjct  419  GGGCATTGCTCAACAGATAATGTCCATGTCTATGTAATTTTTGTATTATCC-AAACCT  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22263783528


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5