BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07505.1
Length=432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497055 jgi|Araly1|497055|fgenesh2_kg.9__20__AT2G07505.1 573 3e-163
Ahg473620 jgi|Araly1|473620|fgenesh2_kg.1__3574__AT2G07505.1 573 3e-163
Ahg493607 jgi|Araly1|493607|fgenesh2_kg.7__3040__AT2G07505.1 497 2e-140
> Ahg497055 jgi|Araly1|497055|fgenesh2_kg.9__20__AT2G07505.1
Length=427
Score = 573 bits (310), Expect = 3e-163
Identities = 388/427 (91%), Gaps = 0/427 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGATAGAGGGAGAGGGATTCCAAGTCGATGTAGATGTGGAGAGGATGTGGTTTTG 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTGATAAAGGAAGAGGGATTCCAAGTCGATGTAGATGTGGAGAGGATGTAGTTTTG 60
Query 61 AGGACATCAAAAACTGTGAAAAATCCAAGGAGACTCTTTTATGCTTGTCGATGTGGAGAG 120
||||||||||| ||| | ||||||||| |||| ||||||||||||||||||| |||||||
Sbjct 61 AGGACATCAAAGACTATTAAAAATCCAGGGAGGCTCTTTTATGCTTGTCGATATGGAGAG 120
Query 121 GAGAATGGTAGTGGTCACTTGTTTAGGTTGACAGATGAAGTAATGGTGGAAGAGATGGAA 180
||||||||| ||||||||||||||| || |||||||||| |||||| ||||||||||||
Sbjct 121 GAGAATGGTCGTGGTCACTTGTTTAAGTGGACAGATGAAACAATGGTTGAAGAGATGGAA 180
Query 181 GACATACTTCCAAAGATTGATGAACTTGAAGGGGCTTCATTGACCTTACAAAAAGGGTTA 240
|||||| ||||||||||||||||||||||| | ||||| ||||| ||||||||||| |||
Sbjct 181 GACATAATTCCAAAGATTGATGAACTTGAAAGAGCTTCCTTGACATTACAAAAAGGTTTA 240
Query 241 CAAGCTTTAGAATTTGAGATGGAAACTCTGGCAATGGAGACTCGTACATGTGAAGCTGTG 300
||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 241 CAAGCTTTAGAATCTGAGATGGAAACTCTTGCAATGGAGACTCGTTCATGTGAAGCTGTT 300
Query 301 GTTTGCGGCTATGAGAAGGAGCTGCTAGGTTTAGAGAAGGAGATTCAAGGTTGCAAGATT 360
|| ||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 301 GTATGCGGTTTTGAGAAGGAGCTGCGGGGTTTAGAGAAGGAGATTCAAGGCTGCAAGATG 360
Query 361 GAATTGCGTGGGTTGAAGAAGATTCTTGTGTGTAAAGTGTTGATGACTCTTGTCTATGTG 420
||||||||||| |||||||| |||||||||||| |||||||||| |||||| ||||||
Sbjct 361 GAATTGCGTGGTTTGAAGAACATTCTTGTGTGTGTAGTGTTGATGGTTCTTGTTTATGTG 420
Query 421 TTTGTGT 427
|||||||
Sbjct 421 TTTGTGT 427
> Ahg473620 jgi|Araly1|473620|fgenesh2_kg.1__3574__AT2G07505.1
Length=427
Score = 573 bits (310), Expect = 3e-163
Identities = 388/427 (91%), Gaps = 0/427 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGATAGAGGGAGAGGGATTCCAAGTCGATGTAGATGTGGAGAGGATGTGGTTTTG 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGGTGATAAAGGAAGAGGGATTCCAAGTCGATGTAGATGTGGAGAGGATGTAGTTTTG 60
Query 61 AGGACATCAAAAACTGTGAAAAATCCAAGGAGACTCTTTTATGCTTGTCGATGTGGAGAG 120
||||||||||| ||| | ||||||||| |||| ||||||||||||||||||| |||||||
Sbjct 61 AGGACATCAAAGACTATTAAAAATCCAGGGAGGCTCTTTTATGCTTGTCGATATGGAGAG 120
Query 121 GAGAATGGTAGTGGTCACTTGTTTAGGTTGACAGATGAAGTAATGGTGGAAGAGATGGAA 180
||||||||| ||||||||||||||| || |||||||||| |||||| ||||||||||||
Sbjct 121 GAGAATGGTCGTGGTCACTTGTTTAAGTGGACAGATGAAACAATGGTTGAAGAGATGGAA 180
Query 181 GACATACTTCCAAAGATTGATGAACTTGAAGGGGCTTCATTGACCTTACAAAAAGGGTTA 240
|||||| ||||||||||||||||||||||| | ||||| ||||| ||||||||||| |||
Sbjct 181 GACATAATTCCAAAGATTGATGAACTTGAAAGAGCTTCCTTGACATTACAAAAAGGTTTA 240
Query 241 CAAGCTTTAGAATTTGAGATGGAAACTCTGGCAATGGAGACTCGTACATGTGAAGCTGTG 300
||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 241 CAAGCTTTAGAATCTGAGATGGAAACTCTTGCAATGGAGACTCGTTCATGTGAAGCTGTT 300
Query 301 GTTTGCGGCTATGAGAAGGAGCTGCTAGGTTTAGAGAAGGAGATTCAAGGTTGCAAGATT 360
|| ||||| | |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 301 GTATGCGGTTTTGAGAAGGAGCTGCGGGGTTTAGAGAAGGAGATTCAAGGCTGCAAGATG 360
Query 361 GAATTGCGTGGGTTGAAGAAGATTCTTGTGTGTAAAGTGTTGATGACTCTTGTCTATGTG 420
||||||||||| |||||||| |||||||||||| |||||||||| |||||| ||||||
Sbjct 361 GAATTGCGTGGTTTGAAGAACATTCTTGTGTGTGTAGTGTTGATGGTTCTTGTTTATGTG 420
Query 421 TTTGTGT 427
|||||||
Sbjct 421 TTTGTGT 427
> Ahg493607 jgi|Araly1|493607|fgenesh2_kg.7__3040__AT2G07505.1
Length=417
Score = 497 bits (269), Expect = 2e-140
Identities = 373/421 (89%), Gaps = 15/421 (4%)
Strand=Plus/Plus
Query 15 GAGAGGGATTCCAAGTCGATGTAGATGTGGAGAGGATGTGGTTTTGAGGACATCAAAAAC 74
|||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 9 GAGAGGGATTCCAAATCGATGTAGATGTGGAGAGGGTGTAGTTTTGAGGACATCAAAGAC 68
Query 75 TGTGAAAAATCCAAGGAGACTCTTTTATGCTTGTCGATGTGGAGAGGAGAATGGTAGTGG 134
| | ||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||
Sbjct 69 TATAAAAAATCCAGGGAGACTCTTTTATGCTTGTCGATATGGAGAGGAGAATAGTCGTGG 128
Query 135 TCACTTGTTTAGGTTGACAGATGAAGTAATGGTGGAAGAGATGGAAGACATACTTCCAAA 194
|||||||||||||| ||| |||||| |||||| |||||||||||||||||| |||| ||
Sbjct 129 TCACTTGTTTAGGTGGACTGATGAAACAATGGTTGAAGAGATGGAAGACATAATTCCGAA 188
Query 195 GATTGATGAACTTGAAGGGGCTTCATTGACCTTACAAAAAGGG-TTACAAGCTTTAGAAT 253
|||||||||||||||| | ||||||||||| |||| ||||||| ||||||||
Sbjct 189 GATTGATGAACTTGAAAGAGCTTCATTGACATTAC-AAAAGGGTTTACAAGC-------- 239
Query 254 TTGAGATGGAAACTCTGGCAATGGAGACTCGTACATGTGAAGCTGTGGTTTGCGGCT-AT 312
||||||||||||||| ||||||||||||||||||||||||||||| || ||||| | |
Sbjct 240 -TGAGATGGAAACTCTTGCAATGGAGACTCGTACATGTGAAGCTGTTGTATGCGGTTTA- 297
Query 313 GAGAAGGAGCTGC-TAGGTTTAGAGAAGGAGATTCAAGGTTGCAAGATTGAATTGCGTGG 371
||||||||||| | | ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 298 GAGAAGGAGCTTCGT-GGTTTAGAGAAGGAGATTCAAGGATGCAAGATAGAATTGCGTGG 356
Query 372 GTTGAAGAAGATTCTTGTGTGTAAAGTGTTGATGACTCTTGTCTATGTGTTTGTGTTGTA 431
|||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||
Sbjct 357 TTTGAAGAACATTCTTGTGTGTATAGTGTTGATGGTTCTTGTTTATGTGTTTGTGTTGTA 416
Query 432 G 432
|
Sbjct 417 G 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15567480312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5