BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07630.1

Length=1377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896999 jgi|Araly1|896999|Al_scaffold_0005_965                     255    5e-67


> Ahg896999 jgi|Araly1|896999|Al_scaffold_0005_965
Length=594

 Score =  255 bits (138),  Expect = 5e-67
 Identities = 197/224 (88%), Gaps = 10/224 (4%)
 Strand=Plus/Plus

Query  532  GATGTTAGGAGTATCTCCAATGCTTTCAATACATCTCAGATCTTGATCAATCCTGATC-T  590
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct  61   GATGTAAGGAGTATCTCCAATGCTTTCAATACATCTCAGATCTTGATCAATCCAGA-CAT  119

Query  591  CCCTGAGATTCTGGAATTTAAAGAC-GCTTTACCAAAAGATTGTCTTGCTCTTACTCT-C  648
            |||||||||||| |  || |||||  | ||||||||||||| | |||||||||||||| |
Sbjct  120  CCCTGAGATTCTTGCCTTCAAAGAAAG-TTTACCAAAAGATGGGCTTGCTCTTACTCTTC  178

Query  649  ATTGAGTCTAAACCAAAGTC-GAAAATTGAT-GAGTTTCCTACTGGGGATTTCTATCTTC  706
             ||||||||||||||||| | | |||| ||| ||| |  |||| ||||||||||||||||
Sbjct  179  -TTGAGTCTAAACCAAAG-CAGGAAAT-GATCGAGCTGACTACAGGGGATTTCTATCTTC  235

Query  707  AGTTTGCTAAAAAGACCATCAAAGAAGTCTCTGAGATGTTTGAT  750
            ||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct  236  AGTTTCCTAAGAAGACCATCAAAGAAGTCGCTGAGATGTTTGAT  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51542183784


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5