BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G07630.1 Length=1377 Score E Sequences producing significant alignments: (Bits) Value Ahg896999 jgi|Araly1|896999|Al_scaffold_0005_965 255 5e-67 > Ahg896999 jgi|Araly1|896999|Al_scaffold_0005_965 Length=594 Score = 255 bits (138), Expect = 5e-67 Identities = 197/224 (88%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 532 GATGTTAGGAGTATCTCCAATGCTTTCAATACATCTCAGATCTTGATCAATCCTGATC-T 590 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | | Sbjct 61 GATGTAAGGAGTATCTCCAATGCTTTCAATACATCTCAGATCTTGATCAATCCAGA-CAT 119 Query 591 CCCTGAGATTCTGGAATTTAAAGAC-GCTTTACCAAAAGATTGTCTTGCTCTTACTCT-C 648 |||||||||||| | || ||||| | ||||||||||||| | |||||||||||||| | Sbjct 120 CCCTGAGATTCTTGCCTTCAAAGAAAG-TTTACCAAAAGATGGGCTTGCTCTTACTCTTC 178 Query 649 ATTGAGTCTAAACCAAAGTC-GAAAATTGAT-GAGTTTCCTACTGGGGATTTCTATCTTC 706 ||||||||||||||||| | | |||| ||| ||| | |||| |||||||||||||||| Sbjct 179 -TTGAGTCTAAACCAAAG-CAGGAAAT-GATCGAGCTGACTACAGGGGATTTCTATCTTC 235 Query 707 AGTTTGCTAAAAAGACCATCAAAGAAGTCTCTGAGATGTTTGAT 750 ||||| |||| |||||||||||||||||| |||||||||||||| Sbjct 236 AGTTTCCTAAGAAGACCATCAAAGAAGTCGCTGAGATGTTTGAT 279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51542183784 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5