BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07674.1

Length=756
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg930997 jgi|Araly1|930997|scaffold_303454.1                       1375    0.0  
  Ahg906439 jgi|Araly1|906439|Al_scaffold_0003_3567                   95.3    6e-19


> Ahg930997 jgi|Araly1|930997|scaffold_303454.1
Length=800

 Score = 1375 bits (744),  Expect = 0.0
 Identities = 752/756 (99%), Gaps = 0/756 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGTTCGTGGGATCTTTGATCCGGATCGAAGTCATCCACCTAGTGGGGGGTCTGGCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  24   ATGGGGTTCGTGGGATCTTTGATCCGGATCGAAGTCATCCACCTAGTGGGGGGTCTGGCT  83

Query  61   TTGCCCGTGTTGGGACCTTTGGTCTTGAATGCAATAGGGGGGCAAGCACTTCCTTCTACC  120
            |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct  84   TTGCCCGTGTTGGGACTTTTTGTCTTGAATGCAATAGGGGGGCAAGCACTTCCTTCTACC  143

Query  121  GGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCCTTTGAACTGGGAGTT  180
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  144  GGCCCTTCCGGGTCGGGCAGTTCTTCCGTGTGGGAGGAAGATTCCTTTGAACTGGGAGTT  203

Query  181  CTCGAGGAATCCGACTcccccccGGCAGGGGGGTCCCGAACGGAAGAGGGGGAACCCTCG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  204  CTCGAGGAATCCGACTCCCCCCCGGCAGGGGGGTCCCGAACGGAAGAGGGGGAACCCTCG  263

Query  241  GTAAATCAGGGCAGTCCCCTCCCGTCCCAAACAGAAGAGGGGGAACCCTCGGTAAATCAA  300
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  264  GTAAATCAGGGCAGTCCCCTCCCGTCCCAAACGGAAGAGGGGGAACCCTCGGTAAATCAA  323

Query  301  GTGCCCCAGGAAGCTGGGCCTGCGCTTCCAGCTAATCCAGTCCCTCCCgggggggAGGAA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  324  GTGCCCCAGGAAGCTGGGCCTGCGCTTCCAGCTAATCCAGTCCCTCCCGGGGGGGAGGAA  383

Query  361  GCTGGGCCAGTAGTCCCCTATCCATACAGGAGGGATGAAATGATTgggggggATAGCGTA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  384  GCTGGGCCAGTAGTCCCCTATCCATACAGGAGGGATGAAATGATTGGGGGGGATAGCGTA  443

Query  421  GAGGCGATAGAACGCCGCCTTCTGGCGAAATACCCCGAAGGCTCTCCCTCTGCGGAGATC  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  GAGGCGATAGAACGCCGCCTTCTGGCGAAATACCCCGAAGGCTCTCCCTCTGCGGAGATC  503

Query  481  ATAGAGATGGCCCGAATAGAGGCCGAAGATCTATTCGAGATCAAAGCCCAAATCATCCAA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  504  ATAGAGATGGCCCGAATAGAGGCCGAAGATCTATTCGAGATCAAAGCCCAAATCATCCAA  563

Query  541  CGGATGGCTCTATATGACCCAACCGGCGATTGGATGGCGCGTGGGGCTCGGGCCCTCGAT  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  564  CGGATGGCTCTATATGACCCAACCGGCGATTGGATGGCGCGTGGGGCTCGGGCCCTCGAT  623

Query  601  AATCCGAGGACCACTAGTGGGGAAGAGTCCTTGGAGCGTCTTTATGATATATGGAAGGAC  660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  624  AATCCGAGGACCACTAGTGGGGAAGAGTCCTTGGAGCGTCTTTATGATATATGGAAGGAC  683

Query  661  CTCCAAGAAACCGGGCCCCTCTCGGACGAGTTTTCTCGTTTACAAGAGAAAGTATTCCTC  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  684  CTCCAAGAAACCGGGCCCCTCTCGGACGAGTTTTCTCGTTTACAAGAGAAAGTATTCCTC  743

Query  721  AAGAAAGGCGGCCCTgggggggACCCTATCGCATAA  756
            ||||||||||||||||||||||||||||||||||||
Sbjct  744  AAGAAAGGCGGCCCTGGGGGGGACCCTATCGCATAA  779


 Score = 62.1 bits (33),  Expect = 6e-09
 Identities = 35/36 (97%), Gaps = 0/36 (0%)
 Strand=Plus/Plus

Query  213  GTCCCGAACGGAAGAGGGGGAACCCTCGGTAAATCA  248
            ||||| ||||||||||||||||||||||||||||||
Sbjct  287  GTCCCAAACGGAAGAGGGGGAACCCTCGGTAAATCA  322


> Ahg906439 jgi|Araly1|906439|Al_scaffold_0003_3567
Length=840

 Score = 95.3 bits (51),  Expect = 6e-19
 Identities = 51/51 (100%), Gaps = 0/51 (0%)
 Strand=Plus/Plus

Query  115  TCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCC  165
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  20   TCTACCGGCCCTTCCGGGTCGGGCAGTTCTTCCATGTGGGAGGAAGATTCC  70



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27867852327


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5