BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07677.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931006 jgi|Araly1|931006|scaffold_303463.1 917 0.0
Ahg927187 jgi|Araly1|927187|scaffold_202748.1 556 2e-157
Ahg931005 jgi|Araly1|931005|scaffold_303462.1 549 3e-155
> Ahg931006 jgi|Araly1|931006|scaffold_303463.1
Length=502
Score = 917 bits (496), Expect = 0.0
Identities = 500/502 (99%), Gaps = 0/502 (0%)
Strand=Plus/Plus
Query 722 CTGGTGATTCTGTTGTATTTATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTAAGGC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTGGTGATTCTGTTGTATTTATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTAAGGC 60
Query 782 GAGCACCAATCTCTAGTAACGTCGGAGGAACAAGCTTCTACGGCGGAGATGAGTACTGTA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGCACCAATCTCTAGTAACGTCGGAGGAACAAGCTTCTACGGCGGAGATGAGTACTGTA 120
Query 842 GTTATTATCAGAGCAATGGAGGCGTTGCTAAGGAAGACGACGGAAGTGCGAAGAAGGGGT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTATTATCAGAGCAATGGAGGCGTTGCTAAGGAAGACGACGGAAGTGCGAAGAAGGGGT 180
Query 902 TTAGGAGGACTGGGAAAGGGAAATTGACGGCTGAAGCTGTCTCTGAGGCGATTAATAGAG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTAGGAGGACTGGGAAAGGGAAATTGACGGCTGAAGCTGTCTCTGAGGCGATTAATAGAG 240
Query 962 CAGCTCAGGGTTTGCCGTTTGAGGTGGTTTATTATCCTACGGCTGGATGGTCGGACTTTG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 CAGCTCAGGGTTTGCCGTTTGAGGTGGTTTATTATCCTACGGCTGGATGGTCGTACTTTG 300
Query 1022 TGGTGAAGGCAGAAGATGTTGAGGCTTCCATGGCTATATTCTGGACTCCTGGTACTAGAG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGTGAAGGCAGAAGATGTTGAGGCTTCCATGGCTATATTCTGGACTCCTGGTACTAGAG 360
Query 1082 TGAAGATGGCCATGGAGACTGAGGACTCTTCGCGGATTACTTGGTTTCAGGGGATTGTCT 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGAAGATGGCCATGGAGACTGAGGACTCTTCGCGGATTACTTGGTTTCAGGGGATTGTCT 420
Query 1142 TCTATACATATCAGGAAACTGGTCCATGGCGTGGATCTCCTTGGAAACAGCTTCAGGTAT 1201
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCTACATATCAGGAAACTGGTCCATGGCGTGGATCTCCTTGGAAACAGCTTCAGGTAT 480
Query 1202 AAGATCCCCTTCACTATTCCCT 1223
||||||||||||||||||||||
Sbjct 481 AAGATCCCCTTCACTATTCCCT 502
> Ahg927187 jgi|Araly1|927187|scaffold_202748.1
Length=1762
Score = 556 bits (301), Expect = 2e-157
Identities = 466/545 (86%), Gaps = 13/545 (2%)
Strand=Plus/Plus
Query 658 ACACCGAGGAGGCACTTGTTAACCACCGGATGGAGCAAGTTCGTGAACAATAAGAAGCTA 717
||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 555 ACACCGAGGCGTCACTTGTTAACCACCGGATGGAGCAAGTTCGTGAATAGCAAGAAGCTA 614
Query 718 ATCGCTGGTGATTCTGTTGTATTTATGAGGAAATCGGCTGATGAGATGTTTATTGGTGTA 777
|||||||| ||||| || || |||||||||||| | || |||||||||||||| |||||
Sbjct 615 ATCGCTGGCGATTCGGTGGTGTTTATGAGGAAAGCTGCAGATGAGATGTTTATGGGTGTT 674
Query 778 AGGCGAGCACCAATCTCTAGTAACGTCGGAGGAA-CAAGCT-TCTACGGCGGAGATGAGT 835
|||||| |||| ||||| || | || |||||||| || ||| | |||||||| |||||||
Sbjct 675 AGGCGAACACCGATCTCAAGCAGCGGCGGAGGAAGCA-GCTAT-TACGGCGGGGATGAGT 732
Query 836 ACTGTAGTTATTATCAGAGCA-ATGGAGGCGTTGCTAAGGAAGACGACGGAAGTGCGAAG 894
|| | ||||| ||| || | | || ||||||||||||||| ||||| |||||||||
Sbjct 733 ACAACGGCTATTA-CAGC-CAGA-GTAG-CGTTGCTAAGGAAGATGACGGGAGTGCGAAG 788
Query 895 AAGGGGTTTAGGAGGACTGGGAAAGGGAAATTGACGGCTGAAGCTGTCTCTGAGGCGATT 954
||| |||||||||| ||||||||||||||||||| ||||| ||||| | ||||||||
Sbjct 789 AAGACGTTTAGGAGGTCTGGGAAAGGGAAATTGACCGCTGAGGCTGTGACGGAGGCGATC 848
Query 955 AATAGAGCAGCTCAGGGTTTGCCGTTTGAGGTGGTTTATTATCCTACGGCTGGATGGTCG 1014
|||||||||||| |||| ||||| ||||||||||| |||||||| || |||||||||||
Sbjct 849 AATAGAGCAGCTAAGGGATTGCCATTTGAGGTGGTGTATTATCCGACTGCTGGATGGTCA 908
Query 1015 GACTTTGTGGTGA-AGGCAGAAGATGTTGAGGCTTCCATGGCTATATTCTGGACTCCTGG 1073
|| |||||||||| || | |||||||||||| | |||||| |||| || |||||||||||
Sbjct 909 GAATTTGTGGTGAGAG-CTGAAGATGTTGAGTCCTCCATGTCTATGTTTTGGACTCCTGG 967
Query 1074 TACTAGAGTGAAGATGGCCATGGAGACTGAGGACTCTTCGCGGATTACTTGGTTTCAGGG 1133
||| |||| |||||||| |||||||||||||| || || ||||| ||||||||||||||
Sbjct 968 GACTCGAGTCAAGATGGCTATGGAGACTGAGGATTCCTCTCGGATCACTTGGTTTCAGGG 1027
Query 1134 GATTGTCTTC-TATACATATCAGGAAACTGGTCCATGGCGTGGATCTCCTTGGAAACAGC 1192
||||| ||| | ||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1028 CATTGT-TTCCTCTACTTATCAAGAAACTGGTCCATGGCGTGGATCTCCATGGAAACAGC 1086
Query 1193 TTCAG 1197
|||||
Sbjct 1087 TTCAG 1091
> Ahg931005 jgi|Araly1|931005|scaffold_303462.1
Length=297
Score = 549 bits (297), Expect = 3e-155
Identities = 297/297 (100%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 407 GCTCTGTTCGCTTCTTTTTCAATGACGGTAACAGACCAACCTTCAATGGCAGATAATTAT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTCTGTTCGCTTCTTTTTCAATGACGGTAACAGACCAACCTTCAATGGCAGATAATTAT 60
Query 467 CAATTTGACTTAGGAGGTTCCGATGCAAAGGCCACACCTGTGGTTGATTGCCTCCGCCAC 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATTTGACTTAGGAGGTTCCGATGCAAAGGCCACACCTGTGGTTGATTGCCTCCGCCAC 120
Query 527 CTCTCTACAGTCAGTTTAAAATTCCACTCTCACCTGTTGGTGCTTAAACTTTCAGCAGCC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTCTACAGTCAGTTTAAAATTCCACTCTCACCTGTTGGTGCTTAAACTTTCAGCAGCC 180
Query 587 CAAAAAACACTCAAAAGCTCCGCTTCGAAAGCAGTTGTTGTTGGCATAAAGGCTCTTCGT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAAAAACACTCAAAAGCTCCGCTTCGAAAGCAGTTGTTGTTGGCATAAAGGCTCTTCGT 240
Query 647 CAAGTCGAACCACACCGAGGAGGCACTTGTTAACCACCGGATGGAGCAAGTTCGTGA 703
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAGTCGAACCACACCGAGGAGGCACTTGTTAACCACCGGATGGAGCAAGTTCGTGA 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5