BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07678.1

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931008 jgi|Araly1|931008|scaffold_303465.1                       1336    0.0  


> Ahg931008 jgi|Araly1|931008|scaffold_303465.1
Length=780

 Score = 1336 bits (723),  Expect = 0.0
 Identities = 733/738 (99%), Gaps = 0/738 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAATGAAATCTCCTTTATTTAGAGGACCACTGGTCAACAGTTCCACAGAAAATCCA  60
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  23   ATGAAAATTAAATCTCCTTTATTTAGAGGACCACTGGTCAACAGTTCCACAGAAAATCCA  82

Query  61   ATTCATATCCTAACGCGAGAGAAATTGAGACATCAGACCAGTGGTACAAACTCAACAGAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  83   ATTCATATCCTAACGCGAGAGAAATTGAGACATCAGACCAGTGGTACAAACTCAACAGAG  142

Query  121  AAAGTAATACTACCTAATATACTTCATAGTTATATCAAAAACCTAAACTTAGATTTCACA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  143  AAAGTAATACTACCTAATATACTTCATAGTTATATCAAAAACCTAAACTTAGATTTCACA  202

Query  181  TCACCATATGGATCAACTGGTAATAATGAAGTATTAAGCATACTTCGTAGTAGGTTTAAA  240
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  203  TCACCATATGGATCAACTGGTAATAATGAATTATTAAGCATACTTCGTAGTAGGTTTAAA  262

Query  241  CAAAGCATTTTCCCATCATCTGGATTAAAGTGTTTGGATACTACTGGTGATTTTCTCATC  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  263  CAAAGCATTTTCCCATCATCTGGATTAAAGTGTTTGGATACTACTGGTGATTTTCTCATC  322

Query  301  AAAAATGTTTTACATAAAAGATATGAAAGTGTTCAGAAGAATATCTCAAATGCATTATCA  360
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  323  AAAAATGTTTTACATAAAAGATATGAAAGTGTTCAGCAGAATATCTCAAATGCATTATCA  382

Query  361  TCCTCCATAAATTCTCGCACTGCAGTCTTCTTTTGTATACTGTTCAGTATAACAGTGTTA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  383  TCCTCCATAAATTCTCGCACTGCAGTCTTCTTTTGTATACTGTTCAGTATAACAGTGTTA  442

Query  421  ATGGAAATAGCTCCTGGACCTCTTTTGAAGAAACCTTCATTATTATTTTCAGATAATTTA  480
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  443  ATGGAAATAGCTCCTGGACCTCTTTTGAACAAACCTTCATTATTATTTTCAGATAATTTA  502

Query  481  CCAAATGTATTGCAATATACACGAGATGTGTATGTGAATCATGTTTGTATAATACACAAA  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  503  CCAAATGTATTGCAATATACACGAGATGTGTATGTGAATCATGTTTGTATAATACACAAA  562

Query  541  AGTTTAAGTCCATGTGAGTGCGAGGAGCCTCTCAATCGAATTATTAGAGATATGTTTCCG  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  563  AGTTTAAGTCCATGTGAGTGCGAGGAGCCTCTCAATCGAATTATTAGAGATATGTTTCCG  622

Query  601  CAAACCACTTTTGACCCACTTGAACTACAGAAACCTTCACCCAGTAAAGTGAAAACTATA  660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  623  CAAACCACTTTTGACCCACTTGAACTACAGAAACCTTCACCCAGTAAAGTGAAAACTATA  682

Query  661  ACCTACATGCTTGGTACTATTCTTCTTGTAATTACATTAATGGATAAGACTGGATACACT  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  683  ACCTACATGCTTGGTACTATTCTTCTTGTAATTACATTAATGGATAAGACTGGATACACT  742

Query  721  CAATTAGTTAAAATGTAG  738
            ||||||||| ||||||||
Sbjct  743  CAATTAGTTCAAATGTAG  760



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27181639821


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5