BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07681.1
Length=2291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480266 jgi|Araly1|480266|fgenesh2_kg.3__2967__ATMG00900.1 1101 0.0
Ahg319392 jgi|Araly1|319392|fgenesh1_pm.C_scaffold_3002408 327 2e-88
Ahg931012 jgi|Araly1|931012|scaffold_303469.1 121 3e-26
> Ahg480266 jgi|Araly1|480266|fgenesh2_kg.3__2967__ATMG00900.1
Length=769
Score = 1101 bits (596), Expect = 0.0
Identities = 600/602 (99%), Gaps = 0/602 (0%)
Strand=Plus/Plus
Query 1226 GACCAGAAGCTACGCGCAAATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTAT 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 GACCAGAAGCTACGCGCAAATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTAT 101
Query 1286 TCATTTAAGTCTTGGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCT 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 TCATTTAAGTCTTGGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCT 161
Query 1346 CTATGTACATGTTCCTGCGGCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAA 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CTATGTACATGTTCCTGCGGCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAA 221
Query 1406 CACTTTCTTGTTCCTATTAACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTAT 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 CACTTTCTTGTTCCTATTAACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTAT 281
Query 1466 AGAAATGGGTGCtttttttACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACC 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AGAAATGGGTGCTTTTTTTACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACC 341
Query 1526 AATGTGGGGGACCTTTTGGGTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCT 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 AATGTGGGGGACCTTTTGGGTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCT 401
Query 1586 TATTTACCTGGGTGCACTGCGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAAT 1645
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TATTTACCTGGGTGCACTGTGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAAT 461
Query 1646 TCGTGCTGGACCGATCGATATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATC 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TCGTGCTGGACCGATCGATATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATC 521
Query 1706 GCATCAACCTGGGAGCATTAGCCGATCTAGTACATCAATACATGTTCCTATGCCCATTCC 1765
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 522 GCATCAACCTGGGAGCATTAGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCC 581
Query 1766 AATCTTGTCTAACTTTGCTAACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAAC 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AATCTTGTCTAACTTTGCTAACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAAC 641
Query 1826 AC 1827
||
Sbjct 642 AC 643
> Ahg319392 jgi|Araly1|319392|fgenesh1_pm.C_scaffold_3002408
Length=321
Score = 327 bits (177), Expect = 2e-88
Identities = 177/177 (100%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 1828 TTCAATCGCAGCTCACAGAATCTAAAGAGATAGCTCGCCCTTATAGCTTATGGGGCATTT 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 20 TTCAATCGCAGCTCACAGAATCTAAAGAGATAGCTCGCCCTTATAGCTTATGGGGCATTT 79
Query 1888 CACTCGCTCAACACTCGTTCAAAACATCCACTCGTTCAACAGGAAAGAAAAGGTCCAAAG 1947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 CACTCGCTCAACACTCGTTCAAAACATCCACTCGTTCAACAGGAAAGAAAAGGTCCAAAG 139
Query 1948 GATCTACTTCTCAGGATGGAAAGAAGCAAGAAAGTCTAGAGAGTCGAAATGACCTTG 2004
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GATCTACTTCTCAGGATGGAAAGAAGCAAGAAAGTCTAGAGAGTCGAAATGACCTTG 196
> Ahg931012 jgi|Araly1|931012|scaffold_303469.1
Length=263
Score = 121 bits (65), Expect = 3e-26
Identities = 88/97 (91%), Gaps = 9/97 (9%)
Strand=Plus/Minus
Query 2102 AGGCAGAGAAAAAAGTGCAAAAGCGATTGAACAAAGTCGCTCCGGT-----T--T--GGA 2152
|||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 227 AGGCAGAGAAAAAAGTGCAAAAGCGATTGAACAAAGTCGCTCCGGTCGAAATGGTTTGGA 168
Query 2153 TGCAGATGAGGGAGAGGGTGAAAGCTTTCATTTAAAG 2189
|||||||||||||||||||||||||||||||||||||
Sbjct 167 TGCAGATGAGGGAGAGGGTGAAAGCTTTCATTTAAAG 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86274404925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5