BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G07687.1 Length=998 Score E Sequences producing significant alignments: (Bits) Value Ahg484738 jgi|Araly1|484738|fgenesh2_kg.5__730__AT2G07687.1 1783 0.0 > Ahg484738 jgi|Araly1|484738|fgenesh2_kg.5__730__AT2G07687.1 Length=992 Score = 1783 bits (965), Expect = 0.0 Identities = 984/993 (99%), Gaps = 1/993 (0%) Strand=Plus/Plus Query 1 ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCG 60 Query 61 GGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAA 120 Query 121 GGGGGTGCAAGACTTCTAAGTTTGGGCCTCATATTTATCCTATATACCATGTTCGTATGG 180 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 121 GGGGGTGCAAGACTTCTAAGTTTGGGCCTCATATTTCTCCTATATACCATGTTCGTATGG 180 Query 181 TGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTA 240 Query 241 GGACCTCGATATGGTTCTATTCTGTTCATCGTATCGGAGGTTATGTTCttttttgctttt 300 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGACCTCGATATGGTTTTATTCTGTTCATCGTATCGGAGGTTATGTTCTTTTTTGCTTTT 300 Query 301 ttttGGGCTTCTTCTCATTCTTCTTTGGCACCTGCGGTAGAGATCGGAGGTATTTGGCCC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTTTGGGCTTCTTCTCATTCTTCTTTGGCACCTGCGGTAGAGATCGGAGGTATTTGGCCC 360 Query 361 CCAAAAGGGATTGAGGTTTTAGATCCTTGGGAAATCCCTTTTCTTAATACCCCTATTCTC 420 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CCAAAAGGGATTGGGGTTTTAGATCCTTGGGAAATCCCTTTTCTTAATACCCCTATTCTC 420 Query 421 CCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAAGAAAAA 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 421 CCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAA 480 Query 481 CGAGCAGTTTATGCTTTAGTAGCTACCGTTTTATTGGCTCTAGTATTTACTGGCTTTCAA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 CGAGCAGTTTATGCTTTAGTAGCTACCGTTTTATTGGCTCTAGTATTTACTGGCTTTCAA 540 Query 541 GGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTT 600 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 541 GGAATGGAATATTATCAAGCACCCTTTACTATTTCGGATAGTATTTATGGTTCTACCTTT 600 Query 601 TTCTTAGCAACAGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATTATA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TTCTTAGCAACAGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATTATA 660 Query 661 TGTGGTATTCGGCAATATCTTGGTCATCTGACGAAGGAGCATCACGTTGGCTTTGAAGCA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TGTGGTATTCGGCAATATCTTGGTCATCTGACGAAGGAGCATCACGTTGGCTTTGAAGCA 720 Query 721 GCTGCATGGTACTGGCATTTTGTAGACGTAGTTTGGTTATTCCTATTTGTCTCTATCTAT 780 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 721 GCTGCATGGTACTGGCATTTTGTAGACGTGGTTTGGTTATTCCTATTTGTCTCTATCTAT 780 Query 781 TGGTGGGGAGGTATATGAAGGAACGAAAGAGTGGATTACAAAATGAAAGCTCGAAGACAA 840 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 781 TGGTGGGGAGGTATATGAAGGAACGAAAGAGTGGATTAAAAAATGAAAGCTCGAAGACAA 840 Query 841 AGAGAACCGGGCTTTTCCAAAGAATTACTGCAGCTTTCCCACTCCCTTTGATTATCATAT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AGAGAACCGGGCTTTTCCAAAGAATTACTGCAGCTTTCCCACTCCCTTTGATTATCATAT 900 Query 901 ACAATAAAGTCTCTTCCACTTTCCTACCAAATCTATCTTTATTCTGGCACATAAATGAAG 960 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 901 ACAATAAAGTCTCTTCCACTTTC-TACCAAATCTCTCTTTATTCTGGCACATAAATGAAG 959 Query 961 GAATCGAAGAGATTATGGCAGATCATGTTCACC 993 ||||||||||||||||||||||||||||||||| Sbjct 960 GAATCGAAGAGATTATGGCAGATCATGTTCACC 992 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37093598241 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5