BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07687.1
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484738 jgi|Araly1|484738|fgenesh2_kg.5__730__AT2G07687.1 1783 0.0
> Ahg484738 jgi|Araly1|484738|fgenesh2_kg.5__730__AT2G07687.1
Length=992
Score = 1783 bits (965), Expect = 0.0
Identities = 984/993 (99%), Gaps = 1/993 (0%)
Strand=Plus/Plus
Query 1 ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATTGAATCTCAGAGGCATTCTTATCATTTGGTAGATCCAAGTCCATGGCCTATTTCG 60
Query 61 GGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTTCACTCGGAGCTTTGGCAACCACCGTAGGAGGTGTGATGTACATGCACCCATTTCAA 120
Query 121 GGGGGTGCAAGACTTCTAAGTTTGGGCCTCATATTTATCCTATATACCATGTTCGTATGG 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 GGGGGTGCAAGACTTCTAAGTTTGGGCCTCATATTTCTCCTATATACCATGTTCGTATGG 180
Query 181 TGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTA 240
Query 241 GGACCTCGATATGGTTCTATTCTGTTCATCGTATCGGAGGTTATGTTCttttttgctttt 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGACCTCGATATGGTTTTATTCTGTTCATCGTATCGGAGGTTATGTTCTTTTTTGCTTTT 300
Query 301 ttttGGGCTTCTTCTCATTCTTCTTTGGCACCTGCGGTAGAGATCGGAGGTATTTGGCCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTTGGGCTTCTTCTCATTCTTCTTTGGCACCTGCGGTAGAGATCGGAGGTATTTGGCCC 360
Query 361 CCAAAAGGGATTGAGGTTTTAGATCCTTGGGAAATCCCTTTTCTTAATACCCCTATTCTC 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAAAAGGGATTGGGGTTTTAGATCCTTGGGAAATCCCTTTTCTTAATACCCCTATTCTC 420
Query 421 CCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAAGAAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 CCTTCATCCGGAGCTGCCGTAACTTGGGCTCATCATGCTATACTCGCGGGGAAGGAAAAA 480
Query 481 CGAGCAGTTTATGCTTTAGTAGCTACCGTTTTATTGGCTCTAGTATTTACTGGCTTTCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGAGCAGTTTATGCTTTAGTAGCTACCGTTTTATTGGCTCTAGTATTTACTGGCTTTCAA 540
Query 541 GGAATGGAATATTATCAAGCACCCTTCACTATTTCGGATAGTATTTATGGTTCTACCTTT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 GGAATGGAATATTATCAAGCACCCTTTACTATTTCGGATAGTATTTATGGTTCTACCTTT 600
Query 601 TTCTTAGCAACAGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATTATA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTTAGCAACAGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATTATA 660
Query 661 TGTGGTATTCGGCAATATCTTGGTCATCTGACGAAGGAGCATCACGTTGGCTTTGAAGCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTGGTATTCGGCAATATCTTGGTCATCTGACGAAGGAGCATCACGTTGGCTTTGAAGCA 720
Query 721 GCTGCATGGTACTGGCATTTTGTAGACGTAGTTTGGTTATTCCTATTTGTCTCTATCTAT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 GCTGCATGGTACTGGCATTTTGTAGACGTGGTTTGGTTATTCCTATTTGTCTCTATCTAT 780
Query 781 TGGTGGGGAGGTATATGAAGGAACGAAAGAGTGGATTACAAAATGAAAGCTCGAAGACAA 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 TGGTGGGGAGGTATATGAAGGAACGAAAGAGTGGATTAAAAAATGAAAGCTCGAAGACAA 840
Query 841 AGAGAACCGGGCTTTTCCAAAGAATTACTGCAGCTTTCCCACTCCCTTTGATTATCATAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGAGAACCGGGCTTTTCCAAAGAATTACTGCAGCTTTCCCACTCCCTTTGATTATCATAT 900
Query 901 ACAATAAAGTCTCTTCCACTTTCCTACCAAATCTATCTTTATTCTGGCACATAAATGAAG 960
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 901 ACAATAAAGTCTCTTCCACTTTC-TACCAAATCTCTCTTTATTCTGGCACATAAATGAAG 959
Query 961 GAATCGAAGAGATTATGGCAGATCATGTTCACC 993
|||||||||||||||||||||||||||||||||
Sbjct 960 GAATCGAAGAGATTATGGCAGATCATGTTCACC 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37093598241
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5