BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07696.1
Length=832
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489702 jgi|Araly1|489702|fgenesh2_kg.6__2836__AT2G07696.1 1485 0.0
> Ahg489702 jgi|Araly1|489702|fgenesh2_kg.6__2836__AT2G07696.1
Length=831
Score = 1485 bits (804), Expect = 0.0
Identities = 823/832 (99%), Gaps = 1/832 (0%)
Strand=Plus/Plus
Query 1 TGGCTGATAAAGATGGACAGTAACGATTGCGTAATATAAATTTATCGGCCTCGTCATCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGCTGATAAAGATGGACAGTAACGATTGCGTAATATAAATTTATCGGCCTCGTCATCGA 60
Query 61 AAGCGGCTTCCAATTGCTCGGAAATTTTCAGCTATATGGGGGGCTTGGATGGTGAGCAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCGGCTTCCAATTGCTCGGAAATTTTCAGCTATATGGGGGGCTTGGATGGTGAGCAAA 120
Query 121 AACTATTGATCAAGAAGTTGGTCAATTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACTATTGATCAAGAAGTTGGTCAATTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTC 180
Query 181 GTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCGAACTGAACGCGATGTAATCAAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCGAACTGAACGCGATGTAATCAAAC 240
Query 241 TTATGGTTGACGCCGTAGAGAATATAAAGCCCATATGCGAAGTAGCAAAAGTAGGAGTAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTATGGTTGACGCCGTAGAGAATATAAAGCCCATATGCGAAGTAGCAAAAGTAGGAGTAG 300
Query 301 CGGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTA 360
Query 361 TTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATAAGCTATAGGATAAGCTTAGAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATAAGCTATAGGATAAGCTTAGAGA 420
Query 421 AATGTTCATTTGCTGAGATACTGGATGCTTACCAAAAGAGGGGAAGTGCACGTAGGAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATGTTCATTTGCTGAGATACTGGATGCTTACCAAAAGAGGGGAAGTGCACGTAGGAAAA 480
Query 481 GGGAGAATCTTCATGGACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGAGAATCTTCATGGACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGT 540
Query 541 AAAGTGAGACCACATAAAGAGCTCTTCGTCATTCAGTCAGATTATTAAGTAAGATATGGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAGTGAGACCACATAAAGAGCTCTTCGTCATTCAGTCAGATTATTAAGTAAGATATGGT 600
Query 601 TTGACCCTTTTCCTTTTTGTTTTCATTTTCATCCAGAAAGCCGGCCTTCCTCATACTCCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGACCCTTTTCCTTTTTGTTTTCATTTTCATCCAGAAAGCCGGCCTTCCTCATACTCCT 660
Query 661 CCCTTCATTCATTGAGTTAGAGGAATCCATAGGAGGCCCACCCGTTATGCATTGCATGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCCTTCATTCATTGAGTTAGAGGAATCCATAGGAGGCCCACCCGTTATGCATTGCATGAA 720
Query 721 AGAACCTTTCTTTTTTGTATGACTGAGAGGAACGCCTCAGGTCGAATGAATACGAAAGGG 780
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 AGAACCTTTCTTTTTTGTATGACTTCTCTTTT-GCCTCAGGTCGAATGAATACGAAAGGG 779
Query 781 AGATCAATCCAAAGAAACAAAAAAGGCCATGAATGAAGAAGTTGGGCCTTTC 832
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGATCAATCCAAAGAAACAAAAAAGGCCATGAATGAAGAAGTTGGGCCTTTC 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30765194019
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5