BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07706.1
Length=2080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952676 jgi|Araly1|952676|scaffold_900027.1 139 7e-32
Ahg497139 jgi|Araly1|497139|fgenesh2_kg.9__104__ATCG00950.1 139 7e-32
Ahg950161 jgi|Araly1|950161|scaffold_802048.1 73.1 8e-12
Ahg359633 jgi|Araly1|359633|fgenesh1_pg.C_scaffold_527000001 73.1 8e-12
> Ahg952676 jgi|Araly1|952676|scaffold_900027.1
Length=10497
Score = 139 bits (75), Expect = 7e-32
Identities = 84/88 (95%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 220 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCCAAATGGCCGCTCAGTTATAAAGG 279
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 6963 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGG 6904
Query 280 AGGTAGGGGTGCAGAGACAGCCAAGGAG 307
||||||||||||||||||||||| ||||
Sbjct 6903 AGGTAGGGGTGCAGAGACAGCCA-GGAG 6877
> Ahg497139 jgi|Araly1|497139|fgenesh2_kg.9__104__ATCG00950.1
Length=2807
Score = 139 bits (75), Expect = 7e-32
Identities = 84/88 (95%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 220 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCCAAATGGCCGCTCAGTTATAAAGG 279
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 1000 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGG 1059
Query 280 AGGTAGGGGTGCAGAGACAGCCAAGGAG 307
||||||||||||||||||||||| ||||
Sbjct 1060 AGGTAGGGGTGCAGAGACAGCCA-GGAG 1086
> Ahg950161 jgi|Araly1|950161|scaffold_802048.1
Length=317
Score = 73.1 bits (39), Expect = 8e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1468 CAGTTGTTCGAGCAAGCAAATGGCTAGCAGGGCCGAGGA 1506
|||||||||||||||||||||||||||||||||||||||
Sbjct 236 CAGTTGTTCGAGCAAGCAAATGGCTAGCAGGGCCGAGGA 274
> Ahg359633 jgi|Araly1|359633|fgenesh1_pg.C_scaffold_527000001
Length=1335
Score = 73.1 bits (39), Expect = 8e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1468 CAGTTGTTCGAGCAAGCAAATGGCTAGCAGGGCCGAGGA 1506
|||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CAGTTGTTCGAGCAAGCAAATGGCTAGCAGGGCCGAGGA 1312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78237363230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5