BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07709.1

Length=6063
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949151 jgi|Araly1|949151|scaffold_801038.1                       69.4    3e-10
  Ahg936835 jgi|Araly1|936835|scaffold_501026.1                       62.1    5e-08


> Ahg949151 jgi|Araly1|949151|scaffold_801038.1
Length=232

 Score = 69.4 bits (37),  Expect = 3e-10
 Identities = 40/41 (98%), Gaps = 1/41 (2%)
 Strand=Plus/Plus

Query  2885  AGTGAGCGAATGTGTGTAAGCCCAGTCAAAGATGACTGTTC  2925
             |||||||||||||||||||||||||||||||||||| ||||
Sbjct  14    AGTGAGCGAATGTGTGTAAGCCCAGTCAAAGATGAC-GTTC  53


> Ahg936835 jgi|Araly1|936835|scaffold_501026.1
Length=307

 Score = 62.1 bits (33),  Expect = 5e-08
 Identities = 33/33 (100%), Gaps = 0/33 (0%)
 Strand=Plus/Minus

Query  596  GGAACTCGACTGAAAGGAGAGGAGAGAAATTCC  628
            |||||||||||||||||||||||||||||||||
Sbjct  149  GGAACTCGACTGAAAGGAGAGGAGAGAAATTCC  117



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 229715510628


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5