BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G07709.1 Length=6063 Score E Sequences producing significant alignments: (Bits) Value Ahg949151 jgi|Araly1|949151|scaffold_801038.1 69.4 3e-10 Ahg936835 jgi|Araly1|936835|scaffold_501026.1 62.1 5e-08 > Ahg949151 jgi|Araly1|949151|scaffold_801038.1 Length=232 Score = 69.4 bits (37), Expect = 3e-10 Identities = 40/41 (98%), Gaps = 1/41 (2%) Strand=Plus/Plus Query 2885 AGTGAGCGAATGTGTGTAAGCCCAGTCAAAGATGACTGTTC 2925 |||||||||||||||||||||||||||||||||||| |||| Sbjct 14 AGTGAGCGAATGTGTGTAAGCCCAGTCAAAGATGAC-GTTC 53 > Ahg936835 jgi|Araly1|936835|scaffold_501026.1 Length=307 Score = 62.1 bits (33), Expect = 5e-08 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 596 GGAACTCGACTGAAAGGAGAGGAGAGAAATTCC 628 ||||||||||||||||||||||||||||||||| Sbjct 149 GGAACTCGACTGAAAGGAGAGGAGAGAAATTCC 117 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 229715510628 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5