BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07714.1

Length=591
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319381 jgi|Araly1|319381|fgenesh1_pm.C_scaffold_3002397          1086    0.0  


> Ahg319381 jgi|Araly1|319381|fgenesh1_pm.C_scaffold_3002397
Length=591

 Score = 1086 bits (588),  Expect = 0.0
 Identities = 590/591 (99%), Gaps = 0/591 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCTTTGGGATCGTTTTTGTGTTAACCTGCATACTCGGAAAATCACTCTGGAGGAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGGATCTTTGGGATCGTTTTTGTGTTAACCTGCATACTCGGAAAATAACTCTGGAGGAT  60

Query  61   GAATCACAAAAGAGGTCAATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAATCACAAAAGAGGTCAATGGATCTTAGGCTATTGCATGGAGTTGCTTATGGTCATTCA  120

Query  121  TGGTTTGGTAAATGGGGTTACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCAT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TGGTTTGGTAAATGGGGTTACCGCTTTTGCAGTGGGAGCTTTGGTGTGGAAGAACACCAT  180

Query  181  TATCACAGGGCAATTGCGTTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAAT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TATCACAGGGCAATTGCGTTTCTAACCTCCATATCTTTGGTGGATGATATAACTGCTAAT  240

Query  241  TTCAGAGAGAATAAAGCCAATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TTCAGAGAGAATAAAGCCAATCTAAATATAGGCGACATAGTCAGGTGCTATAGAGACATG  300

Query  301  AGCGAGATCCAGCTGACTACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  AGCGAGATCCAGCTGACTACTCTGCAAGATCTCCTTAGATTCATGCTTACTATCAAATCC  360

Query  361  CGAGCCCCGCCCATCAGAATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  CGAGCCCCGCCCATCAGAATACCCATAGGAAAGATTGAAGCACCTTCTGTTGTGCTTCCA  420

Query  421  TCGATGAAAGCGTATGGTACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAG  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TCGATGAAAGCGTATGGTACACGAGCATGCCCTCAAGTAAAGCAATGTCCTAAAGATAAG  480

Query  481  GAGAAATCAGTGAAATGTCGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCAC  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  481  GAGAAATCAGTGAAATGTCGGAAGTTTGCCCTCCCCCTCCCCTTACAGGCTTGCTTTCAC  540

Query  541  TTCCCTTTCCGTAGTAGTATGACTCTTCTGTCCGGGTCTTTCAGATCATAA  591
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  541  TTCCCTTTCCGTAGTAGTATGACTCTTCTGTCCGGGTCTTTCAGATCATAA  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21634218963


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5