BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07717.1
Length=5949
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319376 jgi|Araly1|319376|fgenesh1_pm.C_scaffold_3002392 918 0.0
Ahg356389 jgi|Araly1|356389|fgenesh1_pg.C_scaffold_8000176 171 7e-41
Ahg920171 jgi|Araly1|920171|scaffold_101452.1 117 1e-24
Ahg920107 jgi|Araly1|920107|scaffold_101388.1 117 1e-24
> Ahg319376 jgi|Araly1|319376|fgenesh1_pm.C_scaffold_3002392
Length=1389
Score = 918 bits (497), Expect = 0.0
Identities = 499/500 (99%), Gaps = 0/500 (0%)
Strand=Plus/Plus
Query 1891 ACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTCTTTT 1950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 ACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTCTTTT 521
Query 1951 TATGCTATTAGCTATTCTGTTGATTCTTTTCCAAACAGGAACCACCGATTTACAAATATC 2010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TATGCTATTAGCTATTCTGTTGATTCTTTTCCAAACAGGAACCACCGATTTACAAATATC 581
Query 2011 ATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTC 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 ATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTC 641
Query 2071 TTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCTGAAGCTCATGTAGA 2130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 TTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCTGAAGCTCATGTAGA 701
Query 2131 GGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCTTTAAAATTTGGAACCCACGG 2190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 GGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCTTTAAAATTTGGAACCCACGG 761
Query 2191 GTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTCTACTCCTTTCAT 2250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTCTACTCCTTTCAT 821
Query 2251 TTATACTTTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTCAAGACAGATCGA 2310
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 822 TTATACTTTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTTAAGACAGATCGA 881
Query 2311 TCTAAAGAAGATCATTGCTTACTCCTCAGTAGCCCATATGAATCTGGTGACTATTGGTAT 2370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TCTAAAGAAGATCATTGCTTACTCCTCAGTAGCCCATATGAATCTGGTGACTATTGGTAT 941
Query 2371 GTTTAGTCGGGCGGCGGCCG 2390
||||||||||||||||||||
Sbjct 942 GTTTAGTCGGGCGGCGGCCG 961
Score = 852 bits (461), Expect = 0.0
Identities = 461/461 (100%), Gaps = 0/461 (0%)
Strand=Plus/Plus
Query 1 ATGTTAGAACATTTCTGTGAATGCTATTCTAATCTAAGTGGTCTTATTCTGTGTCCTGTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAGAACATTTCTGTGAATGCTATTCTAATCTAAGTGGTCTTATTCTGTGTCCTGTG 60
Query 61 CTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCAAGAATACGACCGATACGATTAATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCAAGAATACGACCGATACGATTAATT 120
Query 121 GGTCTGTGTGCCTCTCTTATTACTTTTTTGTATTCTCCTGTTCCTCGGATACAATTCGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTCTGTGTGCCTCTCTTATTACTTTTTTGTATTCTCCTGTTCCTCGGATACAATTCGAC 180
Query 181 TCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATC 240
Query 241 AATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTG 300
Query 301 ATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATT 360
Query 361 ACAGCATTTTTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTAGATCTTCTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAGCATTTTTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTAGATCTTCTA 420
Query 421 CTATTCTATGTTTTTCCCGAAAGCGTGCCAATCCCTATGTT 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTATTCTATGTTTTTCCCGAAAGCGTGCCAATCCCTATGTT 461
Score = 776 bits (420), Expect = 0.0
Identities = 426/429 (99%), Gaps = 0/429 (0%)
Strand=Plus/Plus
Query 5471 GGAATTGGAGGTAGCATTCTACCGATGTTAAGTCATGGACTGGTTCCTTCAGCCCTTTTT 5530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGAATTGGAGGTAGCATTCTACCGATGTTAAGTCATGGACTGGTTCCTTCAGCCCTTTTT 1020
Query 5531 CTATGTGTTGGTGTTTTATATGACCGACATAAGACTCGACTTGTTAGATATTACGGAGGT 5590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTATGTGTTGGTGTTTTATATGACCGACATAAGACTCGACTTGTTAGATATTACGGAGGT 1080
Query 5591 TTAGTGAGCACCATGCCGAATCTCTCTACCATTTTCTTTTCTTTTACTTTGGCCAATATG 5650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 TTAGTGAGCACCATGCCGAATCTCTCTACCATTTTCTTTTCTTTTACTTTGGCCAATATG 1140
Query 5651 AGTTCACCTGGTACTAGCAGCTTTATCGGGGAATTTCTCATCTTAGTAGGAGCTTTCCAA 5710
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AGTTTACCTGGTACTAGCAGCTTTATCGGGGAATTTCTCATCTTAGTAGGAGCTTTCCAA 1200
Query 5711 AGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGTGCGGCCTATTCC 5770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGTGCGGCCTATTCC 1260
Query 5771 CTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCTGATTTCCTCCATAAATTC 5830
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1261 CTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCCGATTTCCTCCATAAATTC 1320
Query 5831 TCCGATTCAAATGGCAGAGAAGTTTCCATATTTATACCTTTTCTTGTTGGAGGGGCGACC 5890
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TCCGATTTAAATGGCAGAGAAGTTTCCATATTTATACCTTTTCTTGTTGGAGGGGCGACC 1380
Query 5891 GTCCGTTGA 5899
|||||||||
Sbjct 1381 GTCCGTTGA 1389
> Ahg356389 jgi|Araly1|356389|fgenesh1_pg.C_scaffold_8000176
Length=774
Score = 171 bits (92), Expect = 7e-41
Identities = 98/101 (97%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 3387 TTGGGGACAGGTGCACGAACGACAACTCCAAACGTCACACATCCGCCGCCTACTTACCGT 3446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 TTGGGGACAGGTGCACGAACGACAACTCCAAACGTCACACATCCGCCGCCTACTTACCGT 150
Query 3447 TTAGGTGGCACCAGCGAGATCCAGCTAAGGAAAAAGAGTGT 3487
||||||||||||||||||||||||||||||| || || |||
Sbjct 151 TTAGGTGGCACCAGCGAGATCCAGCTAAGGACAAGGATTGT 191
> Ahg920171 jgi|Araly1|920171|scaffold_101452.1
Length=713
Score = 117 bits (63), Expect = 1e-24
Identities = 70/73 (96%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 3533 GCCTTCCCGCGCGCAAAGCGAATGGGCGCTGTGCTGTGGGTCAGTTTCGGGGCGGGGGGC 3592
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GCCTTCCCGCCCCCAAAGCGAATGGGCGCTGTGCTGTGGGTCAGTTTCGGGGCGGGGGGC 572
Query 3593 GCAGAGATA-CCA 3604
||||||||| |||
Sbjct 571 GCAGAGATATCCA 559
> Ahg920107 jgi|Araly1|920107|scaffold_101388.1
Length=713
Score = 117 bits (63), Expect = 1e-24
Identities = 70/73 (96%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 3533 GCCTTCCCGCGCGCAAAGCGAATGGGCGCTGTGCTGTGGGTCAGTTTCGGGGCGGGGGGC 3592
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GCCTTCCCGCCCCCAAAGCGAATGGGCGCTGTGCTGTGGGTCAGTTTCGGGGCGGGGGGC 572
Query 3593 GCAGAGATA-CCA 3604
||||||||| |||
Sbjct 571 GCAGAGATATCCA 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 225376947306
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5