BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07749.1

Length=2124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936832 jgi|Araly1|936832|scaffold_501023.1                       56.5    8e-07


> Ahg936832 jgi|Araly1|936832|scaffold_501023.1
Length=312

 Score = 56.5 bits (30),  Expect = 8e-07
 Identities = 32/33 (97%), Gaps = 0/33 (0%)
 Strand=Plus/Minus

Query  1337  CCCTGCTTTAGCTGCACTTGGTGGTTCCCCGCT  1369
             |||| ||||||||||||||||||||||||||||
Sbjct  150   CCCTACTTTAGCTGCACTTGGTGGTTCCCCGCT  118



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 79913334010


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5