BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07767.1
Length=370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931000 jgi|Araly1|931000|scaffold_303457.1 496 6e-140
> Ahg931000 jgi|Araly1|931000|scaffold_303457.1
Length=652
Score = 496 bits (268), Expect = 6e-140
Identities = 268/268 (100%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 1 CATCGGCGATCTTTCATAGAGTTGCCGAAGCCAGAAAATCTGCTAATGCAATCCGCAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CATCGGCGATCTTTCATAGAGTTGCCGAAGCCAGAAAATCTGCTAATGCAATCCGCAGAA 444
Query 61 TTACATCAGATCAAGGTGTGGATCTATTTCGAACAAGTGATATCCAAGAAGAAGCCATTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTACATCAGATCAAGGTGTGGATCTATTTCGAACAAGTGATATCCAAGAAGAAGCCATTC 504
Query 121 GTTACTTCTCCAACCTGTTTCAGTTTTCACCGGTGAACCACACTCGAGCCTCTATCTCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 GTTACTTCTCCAACCTGTTTCAGTTTTCACCGGTGAACCACACTCGAGCCTCTATCTCAT 564
Query 181 CCCTTCGCTCTCTTATCGACTTCATCAGATGCTCCAACTAGATGCAAGCGAATCTTCTGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CCCTTCGCTCTCTTATCGACTTCATCAGATGCTCCAACTAGATGCAAGCGAATCTTCTGC 624
Query 241 AACAGGTTAACTACGGAGGAGATTCCAA 268
||||||||||||||||||||||||||||
Sbjct 625 AACAGGTTAACTACGGAGGAGATTCCAA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13201833794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5