BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07772.1

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg480275 jgi|Araly1|480275|fgenesh2_kg.3__2976__AT2G07772.1         837    0.0  


> Ahg480275 jgi|Araly1|480275|fgenesh2_kg.3__2976__AT2G07772.1
Length=453

 Score =  837 bits (453),  Expect = 0.0
 Identities = 453/453 (100%), Gaps = 0/453 (0%)
 Strand=Plus/Plus

Query  88   TTAGGGGAAGGTGGATTAGGTCAGTTGGTTAGGGATGTGAGGAAAGGAAGGGAAGGTTGG  147
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTAGGGGAAGGTGGATTAGGTCAGTTGGTTAGGGATGTGAGGAAAGGAAGGGAAGGTTGG  60

Query  148  GCCAGGCAAGCTAGGGAAGTTGAGAAGGTTGGGCTAGGGAAGTTGGGAGTTGGTGTTTCC  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GCCAGGCAAGCTAGGGAAGTTGAGAAGGTTGGGCTAGGGAAGTTGGGAGTTGGTGTTTCC  120

Query  208  CTTGTTCCCAAAAAAGACAAGGCTGAGTTGCCCCTTCTACCATCTGAGGTGGAATACGGA  267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTTGTTCCCAAAAAAGACAAGGCTGAGTTGCCCCTTCTACCATCTGAGGTGGAATACGGA  180

Query  268  TCAAGATTTGCTGAGTATCTCTTGATCGAAGGGTTCAAGCCGCTAAAGCGGAAAGATATA  327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TCAAGATTTGCTGAGTATCTCTTGATCGAAGGGTTCAAGCCGCTAAAGCGGAAAGATATA  240

Query  328  TCTCTTCGCCTGAAGCGTTGTGGATTTAGGCGTGTCACGCCAACCTTCTGTAAGTTCCTG  387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TCTCTTCGCCTGAAGCGTTGTGGATTTAGGCGTGTCACGCCAACCTTCTGTAAGTTCCTG  300

Query  388  GATAATCGTTCCCGGATAATGCCTGCCGCAGGGACTAACCCTATCTTCGCGCATACTTCC  447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GATAATCGTTCCCGGATAATGCCTGCCGCAGGGACTAACCCTATCTTCGCGCATACTTCC  360

Query  448  TTGTTTGTCTGGGAGTTGAATCAGAAGCATCGAATGAAAGCTTCTTTACAGGACCTCTTC  507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TTGTTTGTCTGGGAGTTGAATCAGAAGCATCGAATGAAAGCTTCTTTACAGGACCTCTTC  420

Query  508  TATTTCCCTCCATTCTTCTTCCTAGTGACCTAG  540
            |||||||||||||||||||||||||||||||||
Sbjct  421  TATTTCCCTCCATTCTTCTTCCTAGTGACCTAG  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5