BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07776.2
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg930992 jgi|Araly1|930992|scaffold_303449.1 693 0.0
Ahg930993 jgi|Araly1|930993|scaffold_303450.1 688 0.0
> Ahg930992 jgi|Araly1|930992|scaffold_303449.1
Length=2341
Score = 693 bits (375), Expect = 0.0
Identities = 401/413 (97%), Gaps = 3/413 (1%)
Strand=Plus/Plus
Query 1 TGAAACTATATTGAGGAGAGGGAAGGGGACTTATGTAACTATATTCCGAATCCTTCTCCC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1931 TGAAACTATATTGAGGAGAGGGAAGGGGACTTATGTAACTATATTCCAAATCCTTCTCCC 1990
Query 61 CATCAAAATCTGCCTCCCTTGCCCATAAGGAGAGAGTCTCCCTAGT-GAGGAATCCTTTA 119
| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1991 CGTCAAAATCTGCCTCCCTTGCCCATAAGGAGAGAGTCTCCCTAGTGGTGGAATCCTTTA 2050
Query 120 GAACTGATGACGTCCTAGCTGTGAGCTGACCCAAGAGCTACACTGATTAGGAAGCAGATT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 GAACTGATGACGTCCTAGCTGTGAGCTGACCCAAGAGCTACACTGATTAGGAAGCAGATT 2110
Query 180 CCGCACAGAAGACCAAGCAAATCTCCTCTTCTAGTCTTACCCCCAGGCTGTGGTGCTACG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2111 CCGCACAGAAGACCAAGCAAATCTCCTCTTCTAGTCTTACCCCCAGGCTGTGGTGCTACG 2170
Query 240 AGATGGCAATTTATCGTATAGAAGAATAGATCCGTGGGCCTATTGATTGACCATAGATCA 299
|||||||||||| ||||||||||||||||||||| || |||||||||| |||||||||
Sbjct 2171 AGATGGCAATTTCTCGTATAGAAGAATAGATCCGCGGACCTATTGATTTACCATAGAT-- 2228
Query 300 TAGAACCGATCGACTGCTATCTAAGAGAAGATAAGTAGTTCTTCTATCGTTCAAGGGCAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2229 GCGAACCGATCGACTGCTATCTAAGAGAAGATAAGTAGTTCTTCTATCGTTCAAGGGCAA 2288
Query 360 GGGGGAGAACATGTAGCGGCTTGCCTAGATCTCGTATTTCCCACGTAGTCCGT 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2289 GGGGGAGAACATGTAGCGGCTTGCCTAGATCTCGTATTTCCCACGTAGTCCGT 2341
> Ahg930993 jgi|Araly1|930993|scaffold_303450.1
Length=374
Score = 688 bits (372), Expect = 0.0
Identities = 372/372 (100%), Gaps = 0/372 (0%)
Strand=Plus/Plus
Query 512 GAAAACGAACATAGGATCATCATCATGGCCCTTTTCTTCTTTCTTTTGCTGCTGATCTCA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAAACGAACATAGGATCATCATCATGGCCCTTTTCTTCTTTCTTTTGCTGCTGATCTCA 60
Query 572 CATCGAGAGCAGCTCCTTCTTGTTCAGGGTCATCAGATGAGAGATCTTCTTCCGACTCCG 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATCGAGAGCAGCTCCTTCTTGTTCAGGGTCATCAGATGAGAGATCTTCTTCCGACTCCG 120
Query 632 AGAAATCGGTCAAACGGGAGGCTACCCTCTCCTTTTAGTCGAGTAATCAATCCCTCGACT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAATCGGTCAAACGGGAGGCTACCCTCTCCTTTTAGTCGAGTAATCAATCCCTCGACT 180
Query 692 CATCTCTCTATCCATAAAAAAGCCCTTCCCAGAGGAGAGCGGAAGCTCCAGGATGAGTAT 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATCTCTCTATCCATAAAAAAGCCCTTCCCAGAGGAGAGCGGAAGCTCCAGGATGAGTAT 240
Query 752 GCCCTGGATTCCCGGATTCATTCTCGTCCTGATCCACTCTGGAATTTTCGGAATCTACAA 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCCTGGATTCCCGGATTCATTCTCGTCCTGATCCACTCTGGAATTTTCGGAATCTACAA 300
Query 812 AAACATTCTAGGAAAGGGCTCGTAATGATCTTCTCAAAGATCACAAGGTGCTGAAGTGGC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAACATTCTAGGAAAGGGCTCGTAATGATCTTCTCAAAGATCACAAGGTGCTGAAGTGGC 360
Query 872 AGGATAGGAGGG 883
||||||||||||
Sbjct 361 AGGATAGGAGGG 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32709462786
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5