BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07779.1

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg484745 jgi|Araly1|484745|fgenesh2_kg.5__737__AT2G07779.1          490    5e-138
  Ahg936837 jgi|Araly1|936837|scaffold_501028.1                        388    2e-107


> Ahg484745 jgi|Araly1|484745|fgenesh2_kg.5__737__AT2G07779.1
Length=279

 Score =  490 bits (265),  Expect = 5e-138
 Identities = 275/279 (99%), Gaps = 3/279 (1%)
 Strand=Plus/Plus

Query  319  ATGTTAACAAACCCAGAAAGGTCGTATCGGTCAGGGAGCCAGAAGCGAGATGCGTGCGCA  378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTTAACAAACCCAGAAAGGTCGTATCGGTCAGGGAGCCAGAAGCGAGATGCGTGCGCA  60

Query  379  CGGGTGAGAAATCAGCCGTATTTCAGCCTAGTGGAAAGAAGACACTCAGTGCTAGCAG--  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  61   CGGGTGAGAAATCAGCCGTATTTCAGCCTAGTGGAAAGAAGACACTCAGTGCTAGCAGCA  120

Query  437  G-AGTACTTTCTCGGATACGATCCCTTTTTATAGGTTTGCTGCCCTGCGACACGTGGCAG  495
            | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGAGTACTTTCTCGGATACGGTCCCTTTTTATAGGTTTGCTGCCCTGCGACACGTGGCAG  180

Query  496  AAGAGGACTCAAGGACACATGCCAGATCTTTGGGTCGGTATTTCTTCCTTAAGATCTCAA  555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AAGAGGACTCAAGGACACATGCCAGATCTTTGGGTCGGTATTTCTTCCTTAAGATCTCAA  240

Query  556  CCAACCACCCTTTGGTGGTTTTCCACGACCGAACCATAG  594
            |||||||||||||||||||||||||||||||||||||||
Sbjct  241  CCAACCACCCTTTGGTGGTTTTCCACGACCGAACCATAG  279


> Ahg936837 jgi|Araly1|936837|scaffold_501028.1
Length=217

 Score =  388 bits (210),  Expect = 2e-107
 Identities = 215/217 (99%), Gaps = 1/217 (0%)
 Strand=Plus/Plus

Query  77   TGTTTTTGAGTGTGGGGAATATGGCCACCG-GATAGAGCTTTGTCCGAAGCAAAACCAGA  135
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  1    TGTTTTTGAGTGTGGGGAATATGGCCACCGAGATAGAGCTTTGTCCGAAGCAAAACCAGA  60

Query  136  CTGATGTAGAAAACTCACCGGCGGCGAAGGAGGTTCTCCCAAACCCGGATCCGCAAGTCG  195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CTGATGTAGAAAACTCACCGGCGGCGAAGGAGGTTCTCCCAAACCCGGATCCGCAAGTCG  120

Query  196  GGTCGGAATAAAGGCCTTTCGGACCTTGGATGCTACCTCCCAACAGACGTCGCAAGAGGA  255
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GGTCGGAACAAAGGCCTTTCGGACCTTGGATGCTACCTCCCAACAGACGTCGCAAGAGGA  180

Query  256  CCACGTGGTCAGCCTAAGAATCAGGGACCACAAGATA  292
            |||||||||||||||||||||||||||||||||||||
Sbjct  181  CCACGTGGTCAGCCTAAGAATCAGGGACCACAAGATA  217



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21748685730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5