BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G07783.1
Length=2148
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931018 jgi|Araly1|931018|scaffold_303475.1 2097 0.0
> Ahg931018 jgi|Araly1|931018|scaffold_303475.1
Length=1184
Score = 2097 bits (1135), Expect = 0.0
Identities = 1154/1163 (99%), Gaps = 2/1163 (0%)
Strand=Plus/Plus
Query 4 TCAATATATGAATTCTTTCATTATTCGTTATTTCCGGGTCTTTTTGTTGCATTCACTTAC 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 24 TCAATATATGAATTCTTTCATTATTCGTTATTTCCGGGTCTTTTCGTTGCATTCACTTAC 83
Query 64 AACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGCATTCTTCTTTCT 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 AACAAGAAACAACCACCAGCGTTTGGTGCAGCACCTGCATTTTGGTGCATTCTTCTTTCT 143
Query 124 TTCCTTGGTCTTTCGTTCTGTCATATTCCTAATAACTTATCCAATTACAACGTATTAACC 183
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 144 TTCCTTGGTCTTTTGTTCTGTCATATTTCTAATAACTTATCCAATTACAACGTATTAACC 203
Query 184 GCTAATGCACCTTTCTTTTATCAAATCTCAGGAACATGGTCTAATCATGAGGGTAGTATT 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 GCTAATGCACCTTTCTTTTATCAAATCTCAGGAACATGGTCTAATCATGAGGGTAGTATT 263
Query 244 TTATTATGGTGTCGGATCCCAAATTTTTATGGATTTTTTCTTTGTTACCGGGGTCGACCC 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 TTATTATGGTGTCGGATCCCAAATTTTTATGGATTTTTTCTTTGTTACCGGGGTCGACCC 323
Query 304 CAGAGCCATAATGTCTTAAAACAAGGAGGCCATAGGGAAAGTCttttttttttttttGTC 363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CAAAGCCATAATGTCTTAAAACAAGGAGGCCATAGGGAAAGTCTTTTTTTTTTTTTTGTC 383
Query 364 TCGAACTTCGTGAAGAACTCAATTTTATCTCTCCCTCGTTACGAACAAGAAAGTGGTTTG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TCGAACTTCGTGAAGAACTCAATTTTATCTCTCCCTCGTTACGAACAAGAAAGTGGTTTG 443
Query 424 AAAAACCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTCG 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 AAAAACCAGTTGTACACTCCCTTCGTTCTACGAACCCTTGTTGATTCTGAACTTCGTTCG 503
Query 484 CGAAGGAACCGGACTTTTGACGGACCAGCCCTTTTTTATGCGCCGCTTTATCCTGAAAGG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CGAAGGAACCGGACTTTTGACGGACCAGCCCTTTTTTATGCGCCGCTTTATCCTGAAAGG 563
Query 544 AAAATTAAAAATCCTCTGGACGCTTGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACT 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 AAAATGAAAAATCCTCTGGACGCTTGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACT 623
Query 604 CATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAG 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 CATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAG 683
Query 664 CGAATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAGTTCC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CGAATTGACGGAGCTCTTGGCATTGCTTTGTTTTTCTCTCCTTTCCTATCAGCGAGTTCC 743
Query 724 GATCCTTTTGTTCGAAATTTCTTTGTTTGTACCGAACCGCTTGCAGAATCAAATCCTGTT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GATCCTTTTGTTCGAAATTTCTTTGTTTGTACCGAACCGCTTGCAGAATCAAATCCTGTT 803
Query 784 CCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGGGACGTCGCCAGT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 CCACAAGATCCTATATCAGCTATACATCCTCCTTGCATTTATGCCGGGGACGTCGCCAGT 863
Query 844 GCGGAGGGCTTTGGCTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCACTCG 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 GCGGAGGGCTTTGGCTTATGTAGATCAAAAATGATGAATGGGATTGTGGCACTCCACTCG 923
Query 904 CCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTCGCTCTGCTGGATGC 963
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 924 CCGCCAATGCGGAAGGATGCCGCCGAAAAGAATGGAACGCTGCTTTGCTCTGCTGGATGC 983
Query 964 GTCGGATCCCGTATAACAAGCGAGCTTTTTACCCTAAAATTCAAACATGTGGGCGCAAAA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GTCGGATCCCGTATAACAAGCGAGCTTTTTACCCTAAAATTCAAACATGTGGGCGCAAAA 1043
Query 1024 TGCTATCCTGCTCTATTGTTACGTAGCAATAGAAGCCCGCTCATGCTGCTTCGGCGGCGC 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TGCTATCCTGCTCTATTGTTACGTAGCAATAGAAGCCCGCTCATGCTGCTTCGGCGGCGC 1103
Query 1084 TTTTTCGCCTTCTCTTCGTTCTGGGCAGGAGCGAGAAGCCACTCGACTAAAAGGTACTGA 1143
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1104 TTTTTCGCCTTCTCTTCGTTCTGGACAGGAGCGAGAAGCCACTCGACTAAAAGGTACTGA 1163
Query 1144 CGTAACTCTCAACTaaaaaaaGG 1166
|||||||| |||||||||||||
Sbjct 1164 CGTAACTC--AACTAAAAAAAGG 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80827499890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5