BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G07827.2

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936831 jgi|Araly1|936831|scaffold_501022.1                       60.2    1e-08
  Ahg930992 jgi|Araly1|930992|scaffold_303449.1                       52.8    2e-06


> Ahg936831 jgi|Araly1|936831|scaffold_501022.1
Length=918

 Score = 60.2 bits (32),  Expect = 1e-08
 Identities = 35/36 (97%), Gaps = 1/36 (3%)
 Strand=Plus/Plus

Query  453  GAGAGGTGCTTTAGCAACTCGACTGAAA-GGAGAGG  487
            |||||||||||||||||||||||||||| |||||||
Sbjct  215  GAGAGGTGCTTTAGCAACTCGACTGAAAAGGAGAGG  250


> Ahg930992 jgi|Araly1|930992|scaffold_303449.1
Length=2341

 Score = 52.8 bits (28),  Expect = 2e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  513   GAGAGGTTGTGAACACAAACTCGACTGA  540
             ||||||||||||||||||||||||||||
Sbjct  1822  GAGAGGTTGTGAACACAAACTCGACTGA  1849



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5