BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G09187.1
Length=6471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg887571 jgi|Araly1|887571|Al_scaffold_0804_1 346 1e-93
> Ahg887571 jgi|Araly1|887571|Al_scaffold_0804_1
Length=1065
Score = 346 bits (187), Expect = 1e-93
Identities = 595/782 (76%), Gaps = 68/782 (9%)
Strand=Plus/Plus
Query 1 ATGGAACTTGGAAAAATC-TT-TGAGGGATGCAATCT-AGTCTTGTGAAAAGCCAACTCA 57
|||| || | || ||||| || ||||| | | ||||| | | ||||||| ||| ||||||
Sbjct 99 ATGGTAC-TCGACAAATCTTTGTGAGGCA-G-AATCTAATTTTTGTGAAGAGCGAACTCA 155
Query 58 ACACTTAGATTTCACCGAAATGAATATATTTTTCCAAGAGGTGGAACT-TGAAAAACTTT 116
||||||||||| ||||||| | |||||| |||||| || | ||| ||| ||||| || |
Sbjct 156 ACACTTAGATTCCACCGAAGTAAATATA-TTTTCCGAGCGATGGTACTCGGAAAATCTCT 214
Query 117 TTGAGG--G-ATGAAATCTTGTCTTGTGAATAGCAAACTCAACATTTAGATTTAACCAAA 173
||||| | || ||| || | || |||| ||| ||||||||| ||||||| ||| |
Sbjct 215 GTGAGGCAGAATCAAA--TT-T-TTCTGAAGAGCGAACTCAACACTTAGATTCCACC-GA 269
Query 174 AATGAATATATTTTTCCAAGAGGTGGAACTTGAAAAAATC-CT-TGAAGG-ATGAAATC- 229
| | |||||| |||||| || | ||| ||| | ||||||| || || ||| | | ||||
Sbjct 270 AGTAAATATA-TTTTCCGAGCGATGGTACTCG-AAAAATCTCTGTG-AGGCA-G-AATCA 324
Query 230 TAGTCATGTGAAGAGCGAGCTAAATGAATT-TATTTTTTCGAGA-GGTGGAACTTGA-AA 286
| | |||||||||||| || || | || ||| ||| | | ||| ||| || ||
Sbjct 325 AATTTTTGTGAAGAGCGAACTCAA-CACTTAGATTCCACCGA-ACGATGGTACTCGAGAA 382
Query 287 ATATCCT-TGAGGGATGAAATCT-AGTTTTCTGAAGAGCGAACTCAACACTTAGATTTCG 344
|| | | || || | | ||||| | |||| |||||||||||||||||||||||||| |
Sbjct 383 ATCT-ATGTGTGGCA-G-AATCTAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCA 439
Query 345 CTGAAATGAATATATTTTTTAAAGAGGTGAAACTTGGAAAAATCT-T-TGAGGGATGAAA 402
| ||| | |||||||||| | | | || ||| | |||||||| | ||||| | |||
Sbjct 440 CCGAAGTAAATATATTTTCGGA-GCGATGGTACTCG-AAAAATCTCTGTGAGGCA-GAA- 495
Query 403 TCTAGTCTT-GTGAAGAGCGAACGCAACACTTAGATTTCACCGAAATGAATATATTTTCC 461
| || | || ||||||| ||||| ||||||||||||| ||||||| | ||||||||||||
Sbjct 496 TGTAATTTTTGTGAAGAACGAACTCAACACTTAGATTCCACCGAAGTTAATATATTTTCC 555
Query 462 AAGAGGTGAAACTTGGAAAAAT-TCT-TGAGGGATGAAATCTAGTCTT-GTGAAGAGCGA 518
|| | || ||| | |||||| ||| ||||| | ||| || | | || |||||||||||
Sbjct 556 GAGCGATGGTACTCG-AAAAATCTCTGTGAGGCA-GAA-TCAAATTTTTGTGAAGAGCGA 612
Query 519 ACTCAACACTTAGATTTCACCGAAATGATTATAtttttttCCGAGAGGTGGAACTTGGAA 578
|||||||||||||||| ||||||| | | |||||||| ||||| | ||| ||| | ||
Sbjct 613 ACTCAACACTTAGATTCCACCGAAGTAAATATATTTT---CCGAGCGATGGTACTCG-AA 668
Query 579 AAATC-AT-TGACGG-ATGAAATCT-AGTCTTGTGAAGTGCGAACTCAATACTTAGATTT 634
||||| || ||| | | ||| ||| | | |||||||| |||||||||| |||||||||
Sbjct 669 AAATCTATGTGA-GACA-GAA-TCTTATTTTTGTGAAGAGCGAACTCAACACTTAGATTC 725
Query 635 CACCGAAATGAATATATTTTTCCAAGA-AGGGCAACTTGGAAAAATCCTTGAG-GG-ATG 691
||||||| | |||||||||| || || | || | || | ||||||| ||| | || | |
Sbjct 726 CACCGAAGTAAATATATTTT-CCGAGCGATGGTA-CTCG-AAAAATCTTTGTGAGGCA-G 781
Query 692 AAATCCAGTCTT-GTGAAGAGCGAACTCAACACTTCGATTTCACCGAAATGAATATATTT 750
|| || ||| || ||||||||| ||||||| |||| |||| ||||||| | |||||||||
Sbjct 782 AA-TCTAGTTTTTGTGAAGAGCAAACTCAATACTTAGATTCCACCGAAGTAAATATATTT 840
Query 751 TC 752
||
Sbjct 841 TC 842
Score = 298 bits (161), Expect = 4e-79
Identities = 401/511 (78%), Gaps = 40/511 (8%)
Strand=Plus/Plus
Query 260 TATTTTTTC-GAGAGGTGGAACTTGAAAATATC-CT-TGAGGGATGAAATCT-AGTTTTC 315
||| ||||| ||| | ||| ||| ||||| ||| || ||||| | | ||| | | ||||
Sbjct 450 TATATTTTCGGAGCGATGGTACTCGAAAA-ATCTCTGTGAGGCA-G-AATGTAATTTTTG 506
Query 316 TGAAGAGCGAACTCAACACTTAGATTTCGCTGAAATGAATATATTTTTTAAAGAGGTGAA 375
|||||| ||||||||||||||||||| | | ||| | |||||| |||| || | ||
Sbjct 507 TGAAGAACGAACTCAACACTTAGATTCCACCGAAGTTAATATA-TTTTCCGAGCGATGGT 565
Query 376 ACTTGGAAAAATCT-T-TGAGGGATGAAATC-TAGTCTTGTGAAGAGCGAACGCAACACT 432
|| | ||||||||| | ||||| | | |||| | | ||||||||||||||| |||||||
Sbjct 566 AC-TCGAAAAATCTCTGTGAGGCA-G-AATCAAATTTTTGTGAAGAGCGAACTCAACACT 622
Query 433 TAGATTTCACCGAAATGAATATATTTTCCAAGAGGTGAAACTTGGAAAAATTCT-TGAGG 491
|||||| ||||||| | |||||||||||| || | || || | |||||| ||| || |
Sbjct 623 TAGATTCCACCGAAGTAAATATATTTTCCGAGCGATGGTAC-TCGAAAAA-TCTATGTGA 680
Query 492 GATGA-AATC-TAGTCTTGTGAAGAGCGAACTCAACACTTAGATTTCACCGAAATGATTA 549
|| | |||| || | ||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct 681 GA-CAGAATCTTATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATA 739
Query 550 TAtttttttCCGAGAGGTGGAACTTGGAAAAATCATTG--ACGG-ATGAAATCTAGTCTT 606
|||||| ||||| | ||| ||| | ||||||| ||| | || | ||| |||||| ||
Sbjct 740 TATTTT---CCGAGCGATGGTACTCG-AAAAATCTTTGTGA-GGCA-GAA-TCTAGTTTT 792
Query 607 -GTGAAGTGCGAACTCAATACTTAGATTTCACCGAAATGAATATATTTTTCCAAGA-AGG 664
|||||| || ||||||||||||||||| ||||||| | |||||||||| || || | |
Sbjct 793 TGTGAAGAGCAAACTCAATACTTAGATTCCACCGAAGTAAATATATTTT-CCGAGCGATG 851
Query 665 GCAACTTGGAAAAATC-CT-TGAGGGATGAAATCCAGTCTT-GTGAAGAGCGAACTCAAC 721
| | || | ||||||| || ||||| | ||| || | | || ||||||||||||||||||
Sbjct 852 GTA-CTCG-AAAAATCTCTGTGAGGCA-GAA-TCAAATTTTTGTGAAGAGCGAACTCAAC 907
Query 722 ACTTCGATTTCACCGAAATGAATATATTTTC 752
|||| |||| ||||||| | |||||||||||
Sbjct 908 ACTTAGATTCCACCGAAGTAAATATATTTTC 938
Score = 259 bits (140), Expect = 2e-67
Identities = 503/667 (75%), Gaps = 69/667 (10%)
Strand=Plus/Plus
Query 31 AATCT-AGTCTTGTGAAAAGCCAACTCAACACTTAGATTTCACCGAAATGAATATATTTT 89
||||| | | ||||||| ||| ||||||||||||||||| ||||||| | |||||| |||
Sbjct 398 AATCTAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATA-TTT 456
Query 90 TCCAAGAGGTGGAACTTGAAAAA-CTTTTTGAGG--G-ATGAAATCTTGTCTTGTGAATA 145
|| || | ||| ||| |||||| || | ||||| | ||| || || | ||||||| |
Sbjct 457 TCGGAGCGATGGTACTCGAAAAATCTCTGTGAGGCAGAATGTAA--TT-T-TTGTGAAGA 512
Query 146 GCAAACTCAACATTTAGATTTAACCAAAAATGAATATATTTTTCCAAGAGGTGGAACTTG 205
| ||||||||| ||||||| ||| || | |||||| |||||| || | ||| ||| |
Sbjct 513 ACGAACTCAACACTTAGATTCCACC-GAAGTTAATATA-TTTTCCGAGCGATGGTACTCG 570
Query 206 AAAAAATC-CT-TGAAGG-ATGAAATC-TAGTCATGTGAAGAGCGAGCT-AA-A-TGA-A 257
||||||| || || ||| | | |||| | | |||||||||||| || || | | | |
Sbjct 571 -AAAAATCTCTGTG-AGGCA-G-AATCAAATTTTTGTGAAGAGCGAACTCAACACTTAGA 626
Query 258 TT---------T--AT-T-TTTT-CGAGAGGTGGAACTTGAAAATATCCT-TGAGGGATG 302
|| | || | |||| |||| | ||| ||| ||||| || || || | ||
Sbjct 627 TTCCACCGAAGTAAATATATTTTCCGAGCGATGGTACTCGAAAA-AT-CTATGTGAGA-C 683
Query 303 A-AATC-TAGTTTTCTGAAGAGCGAACTCAACACTTAGATTTCGCTGAAATGAATATATT 360
| |||| || |||| |||||||||||||||||||||||||| | | ||| | ||||||||
Sbjct 684 AGAATCTTATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATATT 743
Query 361 TTTTAAAGAGGTGAAACTTGGAAAAATCTTTGAG-GG-ATGAAATCTAGTCTT-GTGAAG 417
|| | | | || ||| | ||||||||||| | || | ||| |||||| || ||||||
Sbjct 744 TTCCGA-GCGATGGTACTCG-AAAAATCTTTGTGAGGCA-GAA-TCTAGTTTTTGTGAAG 799
Query 418 AGCGAACGCAACACTTAGATTTCACCGAAATGAATATATTTTCCAAGAGGTGAAACTTGG 477
||| ||| ||| ||||||||| ||||||| | |||||||||||| || | || ||| |
Sbjct 800 AGCAAACTCAATACTTAGATTCCACCGAAGTAAATATATTTTCCGAGCGATGGTACTCG- 858
Query 478 AAAAAT-TCT-TGAGGGATGAAATCTAGTCTT-GTGAAGAGCGAACTCAACACTTAGATT 534
|||||| ||| ||||| | ||| || | | || |||||||||||||||||||||||||||
Sbjct 859 AAAAATCTCTGTGAGGCA-GAA-TCAAATTTTTGTGAAGAGCGAACTCAACACTTAGATT 916
Query 535 TCACCGAAATGATTATAtttttttCCGAGAGGTGGAACTTGGAAAAATCA-T-TGACGG- 591
||||||| | | |||||||| ||||| | ||| ||| | ||||||| | ||| |
Sbjct 917 CCACCGAAGTAAATATATTTT---CCGAGCGATGGTACTCG-AAAAATCTCTGTGA-GAC 971
Query 592 ATGAAATCTAGTCTT-GTGAAGTGCGAACTCAATACTTAGATTTCACCGAAATGAATATA 650
| ||| |||| | || |||||| || ||||| | ||||||||| ||| ||| |||||||
Sbjct 972 A-GAA-TCTAATTTTTGTGAAGAGCAAACTCGACACTTAGATTCCACTGAACTGAATAT- 1028
Query 651 TTTTTCC 657
|||||||
Sbjct 1029 TTTTTCC 1035
Score = 206 bits (111), Expect = 2e-51
Identities = 275/350 (79%), Gaps = 27/350 (8%)
Strand=Plus/Plus
Query 401 AATCT-AGTCTTGTGAAGAGCGAACGCAACACTTAGATTTCACCGAAATGAATATATTTT 459
||||| | | ||||||||||||||| ||||| |||||| ||||||| | ||||||||||
Sbjct 32 AATCTAATTTTTGTGAAGAGCGAACTAAACACATAGATTCCACCGAAGTAAATATATTTT 91
Query 460 CCAAGAGGTGAAACTTGGAAAAAT-TCT-TGAGGGATGAAATCT-AGTCTTGTGAAGAGC 516
|| || | || || | || |||| | | ||||| | | ||||| | | |||||||||||
Sbjct 92 CCGAGCGATGGTAC-TCGACAAATCTTTGTGAGGCA-G-AATCTAATTTTTGTGAAGAGC 148
Query 517 GAACTCAACACTTAGATTTCACCGAAATGATTATAtttttttCCGAGAGGTGGAACTTGG 576
|||||||||||||||||| ||||||| | | |||||||| ||||| | ||| ||| ||
Sbjct 149 GAACTCAACACTTAGATTCCACCGAAGTAAATATATTTT---CCGAGCGATGGTACTCGG 205
Query 577 AAAAA-TCAT-TGACGG-ATGAAATCTAGTCTTG-TGAAGTGCGAACTCAATACTTAGAT 632
|||| || | ||| || | ||| || | | || ||||| |||||||||| ||||||||
Sbjct 206 AAAATCTC-TGTGA-GGCA-GAA-TCAAATTTTTCTGAAGAGCGAACTCAACACTTAGAT 261
Query 633 TTCACCGAAATGAATATATTTTTCCAAGA-AGGGCAACTTGGAAAAATC-CT-TGAGGGA 689
| ||||||| | |||||||||| || || | || | || | ||||||| || ||||| |
Sbjct 262 TCCACCGAAGTAAATATATTTT-CCGAGCGATGGTA-CTCG-AAAAATCTCTGTGAGGCA 318
Query 690 TGAAATCCAGTCTT-GTGAAGAGCGAACTCAACACTTCGATTTCACCGAA 738
||| || | | || |||||||||||||||||||||| |||| |||||||
Sbjct 319 -GAA-TCAAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAA 366
Score = 193 bits (104), Expect = 2e-47
Identities = 386/512 (75%), Gaps = 60/512 (12%)
Strand=Plus/Plus
Query 260 TAT-TTTTTCGAGAGGTGGAACT-TGAAAATATCCT-TGAGGGATGAAATC-TAGTTTTC 315
||| |||| |||| | ||| ||| |||||| | || ||||| | | |||| | |||||
Sbjct 180 TATATTTTCCGAGCGATGGTACTCGGAAAATCT-CTGTGAGGCA-G-AATCAAATTTTTC 236
Query 316 TGAAGAGCGAACTCAACACTTAGATTTCGCTGAAATGAATATATTTTTTAAAGAGGTGAA 375
|||||||||||||||||||||||||| | | ||| | |||||| |||| || | ||
Sbjct 237 TGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATA-TTTTCCGAGCGATGGT 295
Query 376 ACTTGGAAAAATCT-T-TGAGGGATGAAATC-TAGTCTTGTGAAGAGCGAACGCAACACT 432
|| | ||||||||| | ||||| | | |||| | | ||||||||||||||| |||||||
Sbjct 296 AC-TCGAAAAATCTCTGTGAGGCA-G-AATCAAATTTTTGTGAAGAGCGAACTCAACACT 352
Query 433 TAGATTTCACCGAAATGAATATATTTTCCAAGAGGTGAAACTTGGAAAAATTCT-TGAG- 490
|||||| ||||| || | | | ||| || | || ||| ||| || |
Sbjct 353 TAGATTCCACCG-AACG-----A---T------GGT---AC-TCGAGAAA-TCTATGTGT 392
Query 491 GG-ATGAAATCT-AGTCTTGTGAAGAGCGAACTCAACACTTAGATTTCACCGAAATGATT 548
|| | | ||||| | | ||||||||||||||||||||||||||||| ||||||| | | |
Sbjct 393 GGCA-G-AATCTAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAAT 450
Query 549 ATAtttttttCCGAGAGGTGGAACTTGGAAAAATCA-T-TGACGG-ATGAAATCTAGTCT 605
||||||| | ||| | ||| ||| | ||||||| | ||| || | ||| | || | |
Sbjct 451 ATATTTT---CGGAGCGATGGTACTCG-AAAAATCTCTGTGA-GGCA-GAA-TGTAATTT 503
Query 606 T-GTGAAGTGCGAACTCAATACTTAGATTTCACCGAAATGAATATATTTTTCCAAGA-AG 663
| |||||| ||||||||| ||||||||| ||||||| | |||||||||| || || |
Sbjct 504 TTGTGAAGAACGAACTCAACACTTAGATTCCACCGAAGTTAATATATTTT-CCGAGCGAT 562
Query 664 GGCAACTTGGAAAAATC-CT-TGAGGGATGAAATCCAGTCTT-GTGAAGAGCGAACTCAA 720
|| | || | ||||||| || ||||| | ||| || | | || |||||||||||||||||
Sbjct 563 GGTA-CTCG-AAAAATCTCTGTGAGGCA-GAA-TCAAATTTTTGTGAAGAGCGAACTCAA 618
Query 721 CACTTCGATTTCACCGAAATGAATATATTTTC 752
||||| |||| ||||||| | |||||||||||
Sbjct 619 CACTTAGATTCCACCGAAGTAAATATATTTTC 650
Score = 182 bits (98), Expect = 4e-44
Identities = 380/508 (75%), Gaps = 52/508 (10%)
Strand=Plus/Plus
Query 260 TAT-TTTTTCGAGAGGTGGAACTTGA-AAATATCCT-TGAGGGATGAAATCT-AGTTTTC 315
||| |||| |||| | ||| ||| || |||| | | ||||| | | ||||| | ||||
Sbjct 84 TATATTTTCCGAGCGATGGTACTCGACAAATCT-TTGTGAGGCA-G-AATCTAATTTTTG 140
Query 316 TGAAGAGCGAACTCAACACTTAGATTTCGCTGAAATGAATATATTTTTTAAAGAGGTGAA 375
|||||||||||||||||||||||||| | | ||| | |||||||||| | | | ||
Sbjct 141 TGAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATATTTTCCGA-GCGATGGT 199
Query 376 ACTTGGAAAAATCT-T-TGAGGGATGAAATCTAGTCTTG-TGAAGAGCGAACGCAACACT 432
||| |||||| ||| | ||||| | ||| || | | || |||||||||||| |||||||
Sbjct 200 ACTCGGAAAA-TCTCTGTGAGGCA-GAA-TCAAATTTTTCTGAAGAGCGAACTCAACACT 256
Query 433 TAGATTTCACCGAAATGAATATATTTTCCAAGAGGTGAAACTTGGAAAAAT-TCT-TGAG 490
|||||| ||||||| | |||||||||||| || | || ||| | |||||| ||| ||||
Sbjct 257 TAGATTCCACCGAAGTAAATATATTTTCCGAGCGATGGTACTCG-AAAAATCTCTGTGAG 315
Query 491 GGATGAAATCTAGTCTT-GTGAAGAGCGAACTCAACACTTAGATTTCACCGAAATGATTA 549
| | ||| || | | || ||||||||||||||||||||||||||| ||||||| |||
Sbjct 316 GCA-GAA-TCAAATTTTTGTGAAGAGCGAACTCAACACTTAGATTCCACCGAAC-GATGG 372
Query 550 TAtttttttCCGAGAGGTGGAACT-TGGAAAAATCATTGACGGATGAAATCTAGTCTTGT 608
|| | | |||| | | | ||| | |||| | | || | | | | ||
Sbjct 373 TACT-----C-GAGAAATCTATGTGTGGCAGAATC-T--A---AT----T-T--T-T-GT 411
Query 609 GAAGTGCGAACTCAATACTTAGATTTCACCGAAATGAATATATTTTTCCAAGA-AGGGCA 667
|||| |||||||||| ||||||||| ||||||| | |||||||||| | || | || |
Sbjct 412 GAAGAGCGAACTCAACACTTAGATTCCACCGAAGTAAATATATTTT-CGGAGCGATGGTA 470
Query 668 ACTTGGAAAAATC-CT-TGAGGGATGAAATCCAGTCTT-GTGAAGAGCGAACTCAACACT 724
|| | ||||||| || ||||| | ||| | | | || ||||||| |||||||||||||
Sbjct 471 -CTCG-AAAAATCTCTGTGAGGCA-GAA-TGTAATTTTTGTGAAGAACGAACTCAACACT 526
Query 725 TCGATTTCACCGAAATGAATATATTTTC 752
| |||| ||||||| | |||||||||||
Sbjct 527 TAGATTCCACCGAAGTTAATATATTTTC 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 245243000412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5