BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G10260.1 Length=1644 Score E Sequences producing significant alignments: (Bits) Value Ahg352052 jgi|Araly1|352052|fgenesh1_pg.C_scaffold_6002645 191 2e-47 Ahg930885 jgi|Araly1|930885|scaffold_303342.1 167 3e-40 Ahg916653 jgi|Araly1|916653|Al_scaffold_0008_1404 102 8e-21 > Ahg352052 jgi|Araly1|352052|fgenesh1_pg.C_scaffold_6002645 Length=1491 Score = 191 bits (103), Expect = 2e-47 Identities = 344/452 (76%), Gaps = 49/452 (11%) Strand=Plus/Plus Query 424 ATGTACCTTCAATGGAGTGATGCAGAAGAAGATAAGGAT-GTGAAGCTTGACAACTTGAT 482 ||||||| |||||||||| |||| || || ||||||||| | | || ||||||||||| Sbjct 1 ATGTACCCTCAATGGAGTAATGCGGAGGAGGATAAGGATCCAGCA-CTAGACAACTTGAT 59 Query 483 AAAAGACATCATCCATAATCTTCTTG-CTTTAGATGCTTGGAAAGATGTGCAAGTATTTT 541 |||||||||||||||||||| ||| |||||||||||||||||| ||||| || |||| Sbjct 60 AAAAGACATCATCCATAATCGA-TTGGCTTTAGATGCTTGGAAAGGTGTGCCAGC-TTTT 117 Query 542 GCAT-TG-CTAAGA-GTAA---AAC--AAAAGCTATTGTGGCT-A-GCGAAAGTATCACA 591 | | || |||||| | || || |||||||| ||| | | | | | | ||| |||| Sbjct 118 GG-TGTGTCTAAGAAGAAACGCAAAGTAAAAGCTACTGTTGATGAAG-GTA-GTAGCACA 174 Query 592 -ATCAAGGGGAAACAAGTT-ATGGAGGCCGAATCTTC-----AA-AA-GT-TGAAAA--C 639 | ||||||||| ||| | | | || |||| ||| || || | | |||| | Sbjct 175 CAG-AAGGGGAAA-AAGATCAAAAAAGCTGAATTTTCTGGCGAAGAAAGAGTCAAAATTC 232 Query 640 AAAAAG----C-AGAAGATAGTCTCAGAAGATAAAGAGGTTGATAAGGATGAGAAGAATA 694 |||||| | ||||||||||||||||||||| | ||||||| |||||||| ||||| | Sbjct 233 AAAAAGAAGACGAGAAGATAGTCTCAGAAGATATACAGGTTGACAAGGATGACAAGAA-A 291 Query 695 G-CTT-TGCGGATATTCTAAAGGTGATG-AAAACACTGAATGAGACTATT-TCAGACGTG 750 | ||| | | |||||| || | ||||| |||| | |||||| || |||| | |||| || Sbjct 292 GGCTTCT-CTGATATTTTATTGATGATGGAAAAAA-TGAATGGGAGTATTGT-AGACATG 348 Query 751 GGCAAGAATCTGAGTTGTAAGATCGATG-CTATGCAGACTAGATTTGAGTCTCAGATTGT 809 || |||||||||||| ||| |||||||| || || ||| || ||||| || || ||||| Sbjct 349 GGTAAGAATCTGAGTAGTAGGATCGATGACT-TGGAGAATACCTTTGACTCACAAATTGT 407 Query 810 TGCATTTGAGA-TAGAGTTAAAGGAACTGAAA 840 ||| |||||| | || || |||||||||||| Sbjct 408 AGCAGTTGAGACT-GATTTGAAGGAACTGAAA 438 Score = 113 bits (61), Expect = 3e-24 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 843 GTCTTCGAAAGTAGAGGAGAAGCCATCTTCAGTGGATGGTTTACCTATTCAAAGGGTGGT 902 ||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| Sbjct 537 GTCTTGGAAAGTAGAGGAGAAGCCATCTTCAGTGGATGGTTTGCCTGTTCAAAGAGTGGT 596 Query 903 AAATAAACCTAAAACAGTGCAGaaaaaaaTAAAGGTAGAAGGTGAA 948 || ||| || | || || ||||| ||| ||||| |||||||||| Sbjct 597 GAAGAAAACTTATACTGTTCAGAAGAAAGTAAAGAAAGAAGGTGAA 642 > Ahg930885 jgi|Araly1|930885|scaffold_303342.1 Length=494 Score = 167 bits (90), Expect = 3e-40 Identities = 328/435 (75%), Gaps = 48/435 (11%) Strand=Plus/Plus Query 411 AACTCGAA-AGAACATGTACCTTCAATGGAGTGATGCAGAAGAAGATAAGGAT-GTGAAG 468 |||| ||| | |||||||||| |||||||||| |||| || || ||||||||| | | Sbjct 33 AACT-GAAGAAAACATGTACCCTCAATGGAGTAATGCGGAGGAGGATAAGGATCCAGCA- 90 Query 469 CTTGACAACTTGATAAAAGACATCATCCATAATCTTCTTG-CTTTAGATGCTTGGAAAGA 527 || ||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 91 CTAGACAACTTGATAAAAGACATCATCCATAATCGA-TTGGCTTTAGATGCTTGGAAAGG 149 Query 528 TGTGCAAGTATTTTGCAT-TG-CTAAGAGTAAAA-CAAA--A---GCTATTGTGGCT-AG 578 ||||| || ||||| | || |||||| ||| |||| | |||| ||| | | | Sbjct 150 TGTGCTAGC-TTTTGG-TGTGTCTAAGAACAAACGCAAAGTAAAAGCTACTGTTGATGAA 207 Query 579 CGAA---AGTATCACAATCAAGGGGAAACAAGTT-ATGGAGGCCGAATCTTC-----AA- 628 ||| ||||||||| ||||||||| ||| | | |||| ||| ||| || Sbjct 208 -GAAGGTAGTATCACACGGAAGGGGAAA-AAGATCAAAAAGGCTAAATTTTCTGGCGAAG 265 Query 629 AA-GT-TGAAAA--CAAAAAG----C-AGAAGATAGTCTCAGAAGATAAAGAGGTTGATA 679 || | | |||| ||||||| | ||||||||||||||||||||| | | ||||||| Sbjct 266 AAAGAGTCAAAATTCAAAAAGAAGACGAGAAGATAGTCTCAGAAGATATACAAGTTGATA 325 Query 680 AGGATGAGAAGAATAG-CTT-TGCGGATATTCTAAAGGTGATG-AAAACACTGAATGAGA 736 ||||||| ||||| || ||| | | |||||| || | ||||| |||| | |||||| || Sbjct 326 AGGATGACAAGAA-AGGCTTCT-CTGATATTTTATTGATGATGGAAAAAA-TGAATGGGA 382 Query 737 CTATT-TCAGACGTGGGCAAGAATCTGAGTTGTAAGATCGATG-CTATGCAGACTAGATT 794 |||| | |||| ||| |||||||||||| ||| |||||||| || || ||| || || Sbjct 383 GTATTGT-AGACAAGGGTAAGAATCTGAGTAGTAGGATCGATGACT-TGGAGAATACCTT 440 Query 795 TGAGTCTCAGATTGT 809 ||| || | |||||| Sbjct 441 TGACTCACGGATTGT 455 > Ahg916653 jgi|Araly1|916653|Al_scaffold_0008_1404 Length=1575 Score = 102 bits (55), Expect = 8e-21 Identities = 136/172 (79%), Gaps = 18/172 (10%) Strand=Plus/Plus Query 1387 CCACACATGACCACTGATAA--AGAAATGGTTGA-ACAATCCATGTTTTT--GATGCTTA 1441 |||||| |||||||| | || ||||||| || ||||| ||||||||| || | | Sbjct 1210 CCACACTTGACCACT-A-AACCTGAAATGG-CGAGACAATGCATGTTTTTGCGA-G-AAA 1264 Query 1442 TGATCCCTGCTATGTTGAGTGCTGTCATTCCAAT-TC-AGATACGCAAGAAGAGCT-TTG 1498 |||||||||| ||| |||||||||| || || | | | ||||| |||||||| | || Sbjct 1265 TGATCCCTGCCATGATGAGTGCTGTGATACC--TGACAACATACGTAAGAAGAG-TAATG 1321 Query 1499 CAAAGTTGGAAGTGAAAAGGATTACAAAGAAGGTC-CTTGAGAATAAAGATC 1549 ||| |||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1322 CAAGGTTGGAAGTGAAAAGGATTACAAAGAAGGTATCTTTC-AATAAAGATC 1372 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61630016410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5