BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G10260.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352052 jgi|Araly1|352052|fgenesh1_pg.C_scaffold_6002645 191 2e-47
Ahg930885 jgi|Araly1|930885|scaffold_303342.1 167 3e-40
Ahg916653 jgi|Araly1|916653|Al_scaffold_0008_1404 102 8e-21
> Ahg352052 jgi|Araly1|352052|fgenesh1_pg.C_scaffold_6002645
Length=1491
Score = 191 bits (103), Expect = 2e-47
Identities = 344/452 (76%), Gaps = 49/452 (11%)
Strand=Plus/Plus
Query 424 ATGTACCTTCAATGGAGTGATGCAGAAGAAGATAAGGAT-GTGAAGCTTGACAACTTGAT 482
||||||| |||||||||| |||| || || ||||||||| | | || |||||||||||
Sbjct 1 ATGTACCCTCAATGGAGTAATGCGGAGGAGGATAAGGATCCAGCA-CTAGACAACTTGAT 59
Query 483 AAAAGACATCATCCATAATCTTCTTG-CTTTAGATGCTTGGAAAGATGTGCAAGTATTTT 541
|||||||||||||||||||| ||| |||||||||||||||||| ||||| || ||||
Sbjct 60 AAAAGACATCATCCATAATCGA-TTGGCTTTAGATGCTTGGAAAGGTGTGCCAGC-TTTT 117
Query 542 GCAT-TG-CTAAGA-GTAA---AAC--AAAAGCTATTGTGGCT-A-GCGAAAGTATCACA 591
| | || |||||| | || || |||||||| ||| | | | | | | ||| ||||
Sbjct 118 GG-TGTGTCTAAGAAGAAACGCAAAGTAAAAGCTACTGTTGATGAAG-GTA-GTAGCACA 174
Query 592 -ATCAAGGGGAAACAAGTT-ATGGAGGCCGAATCTTC-----AA-AA-GT-TGAAAA--C 639
| ||||||||| ||| | | | || |||| ||| || || | | |||| |
Sbjct 175 CAG-AAGGGGAAA-AAGATCAAAAAAGCTGAATTTTCTGGCGAAGAAAGAGTCAAAATTC 232
Query 640 AAAAAG----C-AGAAGATAGTCTCAGAAGATAAAGAGGTTGATAAGGATGAGAAGAATA 694
|||||| | ||||||||||||||||||||| | ||||||| |||||||| ||||| |
Sbjct 233 AAAAAGAAGACGAGAAGATAGTCTCAGAAGATATACAGGTTGACAAGGATGACAAGAA-A 291
Query 695 G-CTT-TGCGGATATTCTAAAGGTGATG-AAAACACTGAATGAGACTATT-TCAGACGTG 750
| ||| | | |||||| || | ||||| |||| | |||||| || |||| | |||| ||
Sbjct 292 GGCTTCT-CTGATATTTTATTGATGATGGAAAAAA-TGAATGGGAGTATTGT-AGACATG 348
Query 751 GGCAAGAATCTGAGTTGTAAGATCGATG-CTATGCAGACTAGATTTGAGTCTCAGATTGT 809
|| |||||||||||| ||| |||||||| || || ||| || ||||| || || |||||
Sbjct 349 GGTAAGAATCTGAGTAGTAGGATCGATGACT-TGGAGAATACCTTTGACTCACAAATTGT 407
Query 810 TGCATTTGAGA-TAGAGTTAAAGGAACTGAAA 840
||| |||||| | || || ||||||||||||
Sbjct 408 AGCAGTTGAGACT-GATTTGAAGGAACTGAAA 438
Score = 113 bits (61), Expect = 3e-24
Identities = 91/106 (86%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 843 GTCTTCGAAAGTAGAGGAGAAGCCATCTTCAGTGGATGGTTTACCTATTCAAAGGGTGGT 902
||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 537 GTCTTGGAAAGTAGAGGAGAAGCCATCTTCAGTGGATGGTTTGCCTGTTCAAAGAGTGGT 596
Query 903 AAATAAACCTAAAACAGTGCAGaaaaaaaTAAAGGTAGAAGGTGAA 948
|| ||| || | || || ||||| ||| ||||| ||||||||||
Sbjct 597 GAAGAAAACTTATACTGTTCAGAAGAAAGTAAAGAAAGAAGGTGAA 642
> Ahg930885 jgi|Araly1|930885|scaffold_303342.1
Length=494
Score = 167 bits (90), Expect = 3e-40
Identities = 328/435 (75%), Gaps = 48/435 (11%)
Strand=Plus/Plus
Query 411 AACTCGAA-AGAACATGTACCTTCAATGGAGTGATGCAGAAGAAGATAAGGAT-GTGAAG 468
|||| ||| | |||||||||| |||||||||| |||| || || ||||||||| | |
Sbjct 33 AACT-GAAGAAAACATGTACCCTCAATGGAGTAATGCGGAGGAGGATAAGGATCCAGCA- 90
Query 469 CTTGACAACTTGATAAAAGACATCATCCATAATCTTCTTG-CTTTAGATGCTTGGAAAGA 527
|| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 91 CTAGACAACTTGATAAAAGACATCATCCATAATCGA-TTGGCTTTAGATGCTTGGAAAGG 149
Query 528 TGTGCAAGTATTTTGCAT-TG-CTAAGAGTAAAA-CAAA--A---GCTATTGTGGCT-AG 578
||||| || ||||| | || |||||| ||| |||| | |||| ||| | | |
Sbjct 150 TGTGCTAGC-TTTTGG-TGTGTCTAAGAACAAACGCAAAGTAAAAGCTACTGTTGATGAA 207
Query 579 CGAA---AGTATCACAATCAAGGGGAAACAAGTT-ATGGAGGCCGAATCTTC-----AA- 628
||| ||||||||| ||||||||| ||| | | |||| ||| ||| ||
Sbjct 208 -GAAGGTAGTATCACACGGAAGGGGAAA-AAGATCAAAAAGGCTAAATTTTCTGGCGAAG 265
Query 629 AA-GT-TGAAAA--CAAAAAG----C-AGAAGATAGTCTCAGAAGATAAAGAGGTTGATA 679
|| | | |||| ||||||| | ||||||||||||||||||||| | | |||||||
Sbjct 266 AAAGAGTCAAAATTCAAAAAGAAGACGAGAAGATAGTCTCAGAAGATATACAAGTTGATA 325
Query 680 AGGATGAGAAGAATAG-CTT-TGCGGATATTCTAAAGGTGATG-AAAACACTGAATGAGA 736
||||||| ||||| || ||| | | |||||| || | ||||| |||| | |||||| ||
Sbjct 326 AGGATGACAAGAA-AGGCTTCT-CTGATATTTTATTGATGATGGAAAAAA-TGAATGGGA 382
Query 737 CTATT-TCAGACGTGGGCAAGAATCTGAGTTGTAAGATCGATG-CTATGCAGACTAGATT 794
|||| | |||| ||| |||||||||||| ||| |||||||| || || ||| || ||
Sbjct 383 GTATTGT-AGACAAGGGTAAGAATCTGAGTAGTAGGATCGATGACT-TGGAGAATACCTT 440
Query 795 TGAGTCTCAGATTGT 809
||| || | ||||||
Sbjct 441 TGACTCACGGATTGT 455
> Ahg916653 jgi|Araly1|916653|Al_scaffold_0008_1404
Length=1575
Score = 102 bits (55), Expect = 8e-21
Identities = 136/172 (79%), Gaps = 18/172 (10%)
Strand=Plus/Plus
Query 1387 CCACACATGACCACTGATAA--AGAAATGGTTGA-ACAATCCATGTTTTT--GATGCTTA 1441
|||||| |||||||| | || ||||||| || ||||| ||||||||| || | |
Sbjct 1210 CCACACTTGACCACT-A-AACCTGAAATGG-CGAGACAATGCATGTTTTTGCGA-G-AAA 1264
Query 1442 TGATCCCTGCTATGTTGAGTGCTGTCATTCCAAT-TC-AGATACGCAAGAAGAGCT-TTG 1498
|||||||||| ||| |||||||||| || || | | | ||||| |||||||| | ||
Sbjct 1265 TGATCCCTGCCATGATGAGTGCTGTGATACC--TGACAACATACGTAAGAAGAG-TAATG 1321
Query 1499 CAAAGTTGGAAGTGAAAAGGATTACAAAGAAGGTC-CTTGAGAATAAAGATC 1549
||| |||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1322 CAAGGTTGGAAGTGAAAAGGATTACAAAGAAGGTATCTTTC-AATAAAGATC 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5