BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G10410.1

Length=1050
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916345 jgi|Araly1|916345|Al_scaffold_0008_1096                    272    3e-72
  Ahg479822 jgi|Araly1|479822|fgenesh2_kg.3__2523__AT5G28141.1         121    1e-26


> Ahg916345 jgi|Araly1|916345|Al_scaffold_0008_1096
Length=405

 Score =  272 bits (147),  Expect = 3e-72
 Identities = 240/283 (85%), Gaps = 13/283 (5%)
 Strand=Plus/Minus

Query  369  TCACCTCTTTGCGACGAGATTAACAGTGGATCTTTGGTCGGATCCTAGATGGCGAGCTGC  428
            ||||| |||||||| | ||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct  405  TCACCACTTTGCGAAGGGATTAACGGTGGTTCTTTGGCCGGATCCTAGATGGCGAGCTGC  346

Query  429  GGGTGTTCCTTAGCTGGATCTTGGTGGATGATGGCTT-GCCTGAGCCAGA-GACCGTCTT  486
            ||||||||||| || ||||||||||||| ||||| || | |||||||| | || | ||||
Sbjct  345  GGGTGTTCCTTGGCCGGATCTTGGTGGAAGATGG-TTCGTCTGAGCCA-ACGA-C-TCTT  290

Query  487  -CTCCGCCGTAGCTAGTTTTCCCTTAGCCGGATCTGAAGTGAGGTTTGCT-TTGGGAGAG  544
             | ||||||| ||| ||||| |||| |||||||||||||| ||||||||| | ||| |||
Sbjct  289  CCGCCGCCGTGGCTGGTTTTTCCTTCGCCGGATCTGAAGTAAGGTTTGCTCTAGGG-GAG  231

Query  545  GTCCTT--GGGTGAGCATCAGTGGAGATGGGGGTAAGTTTCGAATCCTTCGTCTTGCTAG  602
             |  ||  ||||| ||||| |||||| || |||| |||||||| |||||| |||||||||
Sbjct  230  AT--TTGAGGGTGGGCATCGGTGGAGGTGAGGGTGAGTTTCGATTCCTTCTTCTTGCTAG  173

Query  603  GTTGGGGAGAGGAGGGATTGGGTCTCGGTTGTGGCGGTTCTCC  645
            |||||||||| |||| |||||| | |||||||||||||| |||
Sbjct  172  GTTGGGGAGATGAGGTATTGGGGCCCGGTTGTGGCGGTTTTCC  130


> Ahg479822 jgi|Araly1|479822|fgenesh2_kg.3__2523__AT5G28141.1
Length=1478

 Score =  121 bits (65),  Expect = 1e-26
 Identities = 79/86 (92%), Gaps = 0/86 (0%)
 Strand=Plus/Minus

Query  965   TGAGTGGGCCATTAAGCTAAAGAACTGCGATTTTGTTGAATAAAACTACACAATAAATGT  1024
             ||||| | |||| ||| ||||||||| | ||||||||||||||||||||||||||||| |
Sbjct  602   TGAGTTGTCCATAAAGTTAAAGAACTACAATTTTGTTGAATAAAACTACACAATAAATCT  543

Query  1025  TTATAACCAATAGAATCAACAAGCAT  1050
             ||||||||||||||||||||||||||
Sbjct  542   TTATAACCAATAGAATCAACAAGCAT  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39075989925


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5