BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G10440.1
Length=2808
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323027 jgi|Araly1|323027|fgenesh1_pm.C_scaffold_5000571 1977 0.0
> Ahg323027 jgi|Araly1|323027|fgenesh1_pm.C_scaffold_5000571
Length=2934
Score = 1977 bits (1070), Expect = 0.0
Identities = 1644/1908 (86%), Gaps = 92/1908 (5%)
Strand=Plus/Plus
Query 625 CAAAGTATGACTAGAGGTCAACAAGTAGGACAATCTCAACCAATGATGTCACAACAATAC 684
|||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CAAAATATGCCTCGAGGTCAACAAGTAGGACAATCTCAACCAATGATGTCACAACAATAC 792
Query 685 CGA-CAACAATACCCCATGCAGCAGGAT-CCTCAGAACAGAAACTTACAGAAACATTTGG 742
||| | ||| | ||||||||||| | | |||||||| |||| || |||| ||||||| |
Sbjct 793 CGAGC-GCAACATCCCATGCAGCA-GCTGCCTCAGAATAGAAGCTCACAGCAACATTTTG 850
Query 743 ATTTTGTACAAAACAATACCAATCAATTTCAAGCAGCAAGTTCGTTGCGCCAAACACAAA 802
||| |||||| ||||||||||||| ||||||| || |||||||||||||||||| ||||
Sbjct 851 ATTCTGTACAGAACAATACCAATCGGTTTCAAGAAGGAAGTTCGTTGCGCCAAACCCAAA 910
Query 803 ACATAACAGATCAACAGAACCAGCCACAACAATTAGAGAGAGCAAATCCATCTATTCTAA 862
|| ||||||| ||||||||||||| ||| |||||| ||||||| | || ||| |
Sbjct 911 ACTTAACAGACCAACAGAACCAGCAACATCAATTACAGAGAGC--A-CC-TCT-GGC--- 962
Query 863 TAATGAATATCATTGTAGCATCTCAAGATTCTACGGGAAAGACGGTAAATGTCAATGCCG 922
| ||| || | || |||||||||||||||| |||||||||||||||| ||||||||
Sbjct 963 --A--AAT-CCA-TCTA-CATCTCAAGATTCTACAGGAAAGACGGTAAATGCCAATGCCG 1015
Query 923 GAAACTGGCAGGAGGAGACCTATCAGAAGATaaaaaaaCTGAAAGAGATGTGTTTACCTG 982
| |||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||
Sbjct 1016 GGGACTGGCAGGAGGAGACTTATCAGAAGATAAAACACCTGAAAGAGATGTATTTACCTG 1075
Query 983 TTCTCAGTTTAATGCACCAAAGAGTTGCGGAAAAATTGCGGGAGACTGAATCTCTTCCGC 1042
|||| ||| |||||| |||||||||| ||||||||||||| || ||||||||||||||
Sbjct 1076 TTCTGAGTCTAATGCTCCAAAGAGTTAAGGAAAAATTGCGGCAGGTTGAATCTCTTCCGC 1135
Query 1043 CGCA-ACCGATGCAAGCTCAGTGGATTGAAAAGCTAAAGGCGGGAAAATTGTCAATGGAA 1101
| || | | ||||| |||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 1136 CACAGA-AGTTGCAATCTCAGTCAATTGAAAAGCTAAAGGCGGGAAAATCGTCAATCGAA 1194
Query 1102 CACCTTATGTTTTTCTTAAATGTTCATAGGAGCAGTGTATCAGAGAAACATAGAGACAAG 1161
|| ||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 1195 CAACTTATATTTTTCTTAAATGTTCATAAGAGCACTGTATCAGAGAAGCATAGAGACAAG 1254
Query 1162 TTTAGTCAATATGAGTACCACATATTGAAATTTACCAAGAGTCAGACCATGGTTTTGAGG 1221
||||||| || |||| ||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 1255 TTTAGTCTATTTGAGAACCACATATTGAAGTTTACCAAGAGCCAGACCATGGTTCCGAGG 1314
Query 1222 CCAACGCAGCAACAACAAGGACAATTTCCTCCTTCTCA-A---A-C--A--GCAATGCAA 1272
||||||||||| |||||||| ||||||||||||||||| | | | | ||| |||||
Sbjct 1315 CCAACGCAGCAGCAACAAGGGCAATTTCCTCCTTCTCAGAGCCACCAAACGGCATTGCAA 1374
Query 1273 ACCCAAAGTCCTCAAGTCCATGTGTCACAGTCTCTTTATAAG-GAGCAAAGGAGATCACG 1331
||||||||||||||||||||||||| ||||||||| || || || |||| ||| || ||
Sbjct 1375 TCCCAAAGTCCTCAAGTCCATGTGTCGCAGTCTCTTGAT-AGTGATCAAATGAGCTCGCG 1433
Query 1332 GTTGATGCCAAGTAGCCAAAATGAGGCCTCG---TC-----T---T---T-GTTGCAAAT 1376
| ||||||||| ||||||||||| ||||||| || | | | |||||| |
Sbjct 1434 GCTGATGCCAATTAGCCAAAATGCGGCCTCGTCTTCGATAATGCCTCACTCGTTGCAGAC 1493
Query 1377 AAGGCCTAAGTTGGATCCAAGAGACGAGAACATCATTATGGCTTCCTCAGGAAATGTCAT 1436
|||||||||| |||| |||||||| ||||||| |||||||||||| ||||||| ||||||
Sbjct 1494 AAGGCCTAAGCTGGAACCAAGAGATGAGAACAACATTATGGCTTCTTCAGGAAGTGTCAT 1553
Query 1437 GTTACCTTCTGTTAAACAAAATCCTCGGGCCGTA-AACACAAATATCAGTTCGGTTCAGT 1495
||||||||||| |||||| |||| | ||||||| || |||||||||||| ||||||||
Sbjct 1554 GTTACCTTCTGGTAAACAGAATCAGCAGGCCGTACAA-TCAAATATCAGTTTGGTTCAGT 1612
Query 1496 CGTTGCAGAAGCAGAAGCGATTCCATCACCGACAAATG---------CAACA---ACAAC 1543
|||||||| ||||||||| ||||||||| || |||||| ||||| |||||
Sbjct 1613 CGTTGCAGCAGCAGAAGCAATTCCATCATCGCCAAATGCAACCACAACAACAGTTACAAC 1672
Query 1544 AACCACAACAAGGGAATCATCAACATCAAAT---G---------CAGACAAATGAGATGA 1591
||||||||| || |||||| || |||||||| | ||||||||||||||||
Sbjct 1673 AACCACAACTAGCGAATCAGCAGCATCAAATACCGACATCACAACAGACAAATGAGATGA 1732
Query 1592 ATGATGTGAGGATGAGGGAGAGGGTCAACATTAAAGCCAGGTTGCTTGAGCAACAAGTCT 1651
||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1733 ATGATGTTAGGATGAGGCAGAGGGTCAACATTAAAGCCGGGTTGCTTCAGCAACAAGTCT 1792
Query 1652 CATCGAGTCAGCGCCAGGTTCCAAAGCAAGAGTCTAACGTTTCATCCTCTCAGATACAGA 1711
||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 1793 CATCGAGTCAGCGCCAGGTTCCAAAGCCACAGTCTAACGTTTCATCCCCTCAGATACATC 1852
Query 1712 ACCACTCTTCTCCTCAGTTAGTTGACCAGCATATTCTTCCTGCGACGATTAACAAAACCG 1771
||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1853 ACCACTCTTCTCCTCAGTTAGTTGACCAGCAGATTCTTCCTGCG--G-TTAACAAAACCA 1909
Query 1772 GAACCCCATTGAACTCTAGTGGTTCGGCTTTTGTTGCTCCAGCTCCATCTCCAGTTCCTG 1831
||| ||||||| ||| |||| ||| |||||||||||||| || || | | |||| |
Sbjct 1910 AAACTCCATTGATGTCTGGTGGCTCGCCTTTTGTTGCTCCA--TC--TC-CGA-TTCCCG 1963
Query 1832 GAGATTCTGAAATGCCTATATCTGTTGAGTCTCCAGTTTCTGGTGTTGATGAAATAAACT 1891
| ||| ||||||||||||| ||||||||||||||||||||||||||||| || |||| |
Sbjct 1964 GGGATCCTGAAATGCCTATTTCTGTTGAGTCTCCAGTTTCTGGTGTTGA--AA-TAAAAT 2020
Query 1892 CAACTTTAGATTCTTCTAGTAAACTTGGCACACAAGAA-ACTCCTCTGTTATTTGTTCCT 1950
||||||||||||||||| ||||||||||||| | ||| | ||||| ||||| |||||||
Sbjct 2021 CAACTTTAGATTCTTCTTCTAAACTTGGCACAGAGGAACA-TCCTCCGTTATCTGTTCCT 2079
Query 1951 CCGCCCGAGCCAATCACAGAGCGGCCTATTGATCGACTTATAAAAGCGTTTCAAGCAGCA 2010
|| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 2080 CC-C--GAGCCAATCACGGAGCGGCCTATTGATCGACTGATAAAAGCGTTTCAAGCAGCA 2136
Query 2011 TCACCAAAATCATTGGCAGAATCTGTAAGTGAGATTAGCTCGGTGATTAGTATGGTTGAC 2070
||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||
Sbjct 2137 TCACCAAAATCCTTGGCAGAATCTGTAAGTGAGATTAGCGCGGTCATCAGTATGGTTGAC 2196
Query 2071 ATGATTGGAGGATCGTTCCCTTCTAGTGGAGGATCTA-GAGCTGGTTTAGGCGAGGATTT 2129
| | ||| |||||| |||| ||| |||||||||| | |||||||||||||||| |||||
Sbjct 2197 AGGTTTGCAGGATCATTCCATTCCGGTGGAGGATC-ACGAGCTGGTTTAGGCGAAGATTT 2255
Query 2130 GAGTGAGAGGACAAGAAACTTTACCACACACGAAGAAACAAATCTGTCTAAGAGAATGAA 2189
|||||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||||
Sbjct 2256 GAGTGAGAGGACAAGAAACTTTTCGACACACGAAGAAACAAATCCGTCTAAAAGAATGAA 2315
Query 2190 GCGATCAATCAACATTGTGCCGCCAGATATGTCATCACAAATTGATAGTTATGAACAGTT 2249
||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2316 GCGCTCAGTCAGCATTGTGCCGCGGGATATGTCATCACAAATTGATAGTTATGAACAGTT 2375
Query 2250 GAGTAGCCTTGAATCTGAAGTTGTTTCCACAACATCATCTGGCTTGAAAGTTAACAATAT 2309
|||||||||||||||||||| | ||||||| | |||||||||| ||||||||||||||
Sbjct 2376 CAGTAGCCTTGAATCTGAAGTCGATTCCACAGCGTCATCTGGCTCAAAAGTTAACAATAT 2435
Query 2310 TGCGCCTGGTTATGCCCTTTTGCAAGAAATCAAAGAAACAAATGGGAGACTTGTAGAGAC 2369
||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2436 TGCGCCTGGTTGTGCCCTTTTGCAAGAAATCAAAGAAACAAACGGGAGACTTATAGAGAC 2495
Query 2370 AGTGGTAGAGATATGTGATGAAGATTCTTTAGGAACAATCGTCACTTGTACTTATGCTCC 2429
||||||||||||||| ||||||||| || |||||||||||| || ||||||||||||||
Sbjct 2496 AGTGGTAGAGATATGCGATGAAGATGCTACAGGAACAATCGTGACGTGTACTTATGCTCC 2555
Query 2430 TGTGGCTCTCAGTGCCACATTCAAAGATCATTACAAGTCTGGAAAAAT 2477
||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 2556 TGTGGCTCTCAGTGCTACCTTCAAAGATCATTACAAGTCAGGAAAAAT 2603
Score = 418 bits (226), Expect = 1e-115
Identities = 363/425 (85%), Gaps = 26/425 (6%)
Strand=Plus/Plus
Query 1 ATGGAGGGAAATACTAACTGGAAGCCTAATGAACAAGGCGGAAACCGTGATGCTGCGAAT 60
|||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct 1 ATGGAGGGAAATACTAACTGGAAGCCTAATGAACAAGGCGGAGAC--TCC-GCTGCGAAT 57
Query 61 AAT-CGTATTGATTGGAGATCACAACATGAGCCTGAATTACGGCAAAAGGTTCTTTCAAA 119
||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 58 AATGC-TATTGATTGGAGATCACAACATGAGCCTGAATTACGGAAAAAGGTTCTTTCAAA 116
Query 120 AATAGTTGAAAAGTTCAAGGAAAAGTT-TCATGCACATGAAGAATATAAGATTA-ACGAC 177
|||||| |||||||| |||||| | || || | | ||||||||||||||||||| | |||
Sbjct 117 AATAGTGGAAAAGTTGAAGGAATA-TTGTCCTACGCATGAAGAATATAAGATTATA-GAC 174
Query 178 ATCGCTTCCAAATTTGAAGAAAATTTTTATAGCATAGC-AACCGATAAGACTACAACGAG 236
|| |||||||||||||| || || |||||||||||||| ||| ||||||||| |||| ||
Sbjct 175 ATTGCTTCCAAATTTGAGGAGAAGTTTTATAGCATAGCCAAC-GATAAGACTCCAACAAG 233
Query 237 CCAACAATGGTTAC-AGCAAAACACACAGAGCAATCTC----TG--TG--TCATCTGCTT 287
|||||||||||||| | |||||||| |||||||||||| | || || |||| ||
Sbjct 234 CCAACAATGGTTACCA-CAAAACACCCAGAGCAATCTCAACATTCCTGGGTCTTCTGGTT 292
Query 288 TGCCAAGTCAGGTCCCTATAACCGTTCCCGGTTCTCAAAGACAGATACATGCTCGGTCAC 347
|||||||||||| ||||||||||||| | || |||||| || | ||| | || | |||
Sbjct 293 TGCCAAGTCAGGCCCCTATAACCGTTTCAGGCGCTCAAA-ACC-A-ACAAGTTCAGCCAC 349
Query 348 CGCAGCCGCAACATCATCCGCAAAGTTTGTTGAAACAACCTATTCAACAG-CCTTTTCCT 406
|||||| ||| ||||||||||||||| |||| |||||||||||||| ||| |||| |||
Sbjct 350 CGCAGCAGCAGCATCATCCGCAAAGTCTGTTAAAACAACCTATTCAGCAGTCCTTC-CCT 408
Query 407 CAATC 411
|||||
Sbjct 409 CAATC 413
Score = 324 bits (175), Expect = 3e-87
Identities = 200/212 (94%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 2598 TGTACACAAGTATGAGGATCTATCCGCGAGAACCAGATCAAGGTTCAGTTTGTCCATGAA 2657
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2724 TGTACACAAGTATGAGGATCTATCGGCGAGAACCAGATCAAGGTTCAGTTTGTCCATGAC 2783
Query 2658 GGAATTTTCAGAACCAGGGTTTTC-GAAAGGAATAGCTCAAACGTGGAATGATTGTGCGA 2716
|||| |||||||||||||| | | ||||| ||||||| |||||||||||||||||||||
Sbjct 2784 GGAACTTTCAGAACCAGGG-TCACTGAAAGAAATAGCTAAAACGTGGAATGATTGTGCGA 2842
Query 2717 GAGCGACAATGGTTGAGTACGCAGAGAGACATGGTGGAGGCACTTTCAGCTCCAAGTATG 2776
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2843 GAGCGACAATGGTTGAGTACGCAGAGCGACATGGTGGAGGCACTTTCAGCTCCAAGTACG 2902
Query 2777 GTGCTTGGGAAACGGTTCTAAGAGCTTCATGA 2808
||||||||||||| ||||||||||||||||||
Sbjct 2903 GTGCTTGGGAAACTGTTCTAAGAGCTTCATGA 2934
Score = 111 bits (60), Expect = 2e-23
Identities = 113/136 (83%), Gaps = 14/136 (10%)
Strand=Plus/Plus
Query 462 GGAACAGAAACGACAAGAACAAGAGCAACTCATTAATCAACTGACGAAT------C---- 511
||||||||||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 537 GGAACAGAAACGACAAGAACAAGAGCAACTCATTAGTCAACTGATGAATGTTAAGCAGAA 596
Query 512 T--TCCAACATCACGACCAAACAATAGAGAC-CAACAAGGAGCTTTTCAGGTATCCTCGT 568
| |||||||||||||| |||||| ||| | ||||||||| |||||| |||||| ||||
Sbjct 597 TCATCCAACATCACGACAAAACAACGGAG-CGCAACAAGGATCTTTTCGGGTATCATCGT 655
Query 569 CTCAGCAGAACAATAA 584
|||| |||||||||||
Sbjct 656 CTCAACAGAACAATAA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105967061590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5