BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G10970.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480278 jgi|Araly1|480278|fgenesh2_kg.3__2979__AT2G10970.1 894 0.0
> Ahg480278 jgi|Araly1|480278|fgenesh2_kg.3__2979__AT2G10970.1
Length=625
Score = 894 bits (484), Expect = 0.0
Identities = 580/627 (93%), Gaps = 4/627 (1%)
Strand=Plus/Plus
Query 48 ATGGTTTGT-TTATATGCTTCTCATGCATACCTATCAATCCATATCCTAACCTTCCTTCT 106
|||| |||| || || ||||||||||||||| ||||||||||||| ||||||| |||||
Sbjct 1 ATGGCTTGTGTT-TACGCTTCTCATGCATACATATCAATCCATATAGTAACCTTTCTTCT 59
Query 107 CCTCTCGCGGTGGCCATATACCAATGCAAAATCCAACATTGCTACCCATTTATCAACCAA 166
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 60 CCTCTCGCGGTGGCCATCTACCAATGCAAAGTCCAACATTGCTAGCCATTTATCAACGAA 119
Query 167 ACCAAAGACATGTCCATATCCATCATTACTGATATCAAAGGCTTGTAAAGGCACCGCGTC 226
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 ACCAAAGACATGTCCATATCCATCATTGCTGATATCAAAGGCTTGTAAAGGCACCGCGTC 179
Query 227 ATTCTCGTCCCTAGAAGAAGAATGTATCAAATCCCTAACGTTAGATCATCGCACGAAA-T 285
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||| |
Sbjct 180 ATTCTCGTCCCTAGAAGAAGCATGTATCGAATCCCTAACGTTAGATCACCGCAC-AAACT 238
Query 286 CCGCATCGACTGTATTAGAGTTGGCTAAGGCGGCTCTTTCTCTAGCCATGGAGAAGGCAG 345
| |||||||||| ||| |||||||||||||| || |||||| |||||||||| |||||||
Sbjct 239 CTGCATCGACTGCATTGGAGTTGGCTAAGGCCGCCCTTTCTATAGCCATGGAAAAGGCAG 298
Query 346 AGCACACACAGTTTCTCATTGGTTCTCCTAAGAAGCCATGTTTCAAGAGTTGTATGGAGA 405
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 AGCATACGCAGTTTCTCATTGGTTCTCCGAAGAAGCCATGTTTCAAGAGTTGTATGGAGA 358
Query 406 ACTATAAAGATTCTGTTGTCGAGGGGCTAATGAAGGCACAGCGGTCAATGGGCAATGGTG 465
||||||| |||||||| ||||||||||||||||||||| || |||| || || || ||||
Sbjct 359 ACTATAAGGATTCTGTAGTCGAGGGGCTAATGAAGGCAGAGTGGTCGATAGGAAAAGGTG 418
Query 466 ATGTTGATGAGACTGATGACGACCTTAGTCTCGCACGTGATGCTGCTGACTATTGCAATA 525
|||| |||||||| |||||| | |||||||| |||||||||||||||||||| |||||||
Sbjct 419 ATGTCGATGAGACCGATGACCAACTTAGTCTTGCACGTGATGCTGCTGACTACTGCAATA 478
Query 526 TGATTTTGTCTGTTGATCCAGATGATACAAGATCCTTAGTTTTTGCGGCCAACGTGGATG 585
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 479 TGATTTTGTCTGTTGATCCAGATGATACAAGATCCCTAGTTTTTGCGGCCAACATGGATG 538
Query 586 TGTATAATCACATTACGTTTGTGATGAGTGTAGCAGACTTGTTGTAGATCAATCTCAAAG 645
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 TGTATAATCACATTACGTTTGTGATGAGTGTAGCAGACTTGCTGTAGATCAATCTCAAAG 598
Query 646 TTCCATTTTCATTTACAATATAATTTT 672
|||||||| |||||||||||| |||||
Sbjct 599 TTCCATTTACATTTACAATATTATTTT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5