BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G10980.1 Length=813 Score E Sequences producing significant alignments: (Bits) Value Ahg906300 jgi|Araly1|906300|Al_scaffold_0003_3428 191 8e-48 > Ahg906300 jgi|Araly1|906300|Al_scaffold_0003_3428 Length=183 Score = 191 bits (103), Expect = 8e-48 Identities = 117/124 (94%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 1 ATGGATCCATCAGAATATCCTTTTGACATCAAAGCTTACAAGAGGCAGTCTGAAATTGAA 60 |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 1 ATGGATCCATTAGAATATCCTTTTGATATCAAAGCTTACAAGAGGCAGTCTGAAATGGAA 60 Query 61 GAGATGTATATCATCAATCGGTTTAGGGAGCGTCGAAACAAAATAGGGGAAGACTATCCA 120 |||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| Sbjct 61 GAGAGGTATATCATCAACCGGTTTAGGGAGCATCGAAACAAAATAGAGGAAGACTATCCA 120 Query 121 CCTC 124 |||| Sbjct 121 CCTC 124 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30040858596 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5