BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G10980.1

Length=813
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg906300 jgi|Araly1|906300|Al_scaffold_0003_3428                    191    8e-48


> Ahg906300 jgi|Araly1|906300|Al_scaffold_0003_3428
Length=183

 Score =  191 bits (103),  Expect = 8e-48
 Identities = 117/124 (94%), Gaps = 0/124 (0%)
 Strand=Plus/Plus

Query  1    ATGGATCCATCAGAATATCCTTTTGACATCAAAGCTTACAAGAGGCAGTCTGAAATTGAA  60
            |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  1    ATGGATCCATTAGAATATCCTTTTGATATCAAAGCTTACAAGAGGCAGTCTGAAATGGAA  60

Query  61   GAGATGTATATCATCAATCGGTTTAGGGAGCGTCGAAACAAAATAGGGGAAGACTATCCA  120
            |||| |||||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct  61   GAGAGGTATATCATCAACCGGTTTAGGGAGCATCGAAACAAAATAGAGGAAGACTATCCA  120

Query  121  CCTC  124
            ||||
Sbjct  121  CCTC  124



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30040858596


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5