BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G10990.1

Length=982
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321611 jgi|Araly1|321611|fgenesh1_pm.C_scaffold_4001668           289    3e-77


> Ahg321611 jgi|Araly1|321611|fgenesh1_pm.C_scaffold_4001668
Length=198

 Score =  289 bits (156),  Expect = 3e-77
 Identities = 186/200 (93%), Gaps = 4/200 (2%)
 Strand=Plus/Plus

Query  42   ATGAAGGCTCTCCAAGTGCTATGTAAGACTGAAACCTTCTTTCTTGAATCACACTTC-GA  100
            |||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| || ||
Sbjct  1    ATGAAGGCTCTCCAAGTGCTATGTAAGACTAAAACCTTCTGTCTCGAATCACAC-TCTGA  59

Query  101  GAAATGGATCGCGCGATCAGATTTGCGTTTGTGGCAATATGACGGAATGTACAAGATTCA  160
            ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  60   GAAATAGATCACGCGATCAGATTTGCGTTTGTGGCAATGTGACGGAATGTACAAGATTCA  119

Query  161  AATGCACCAGCAATC-TCATGGATTTGTGCTAACCAATTCCTGTAGAAAGGCCATTTGGA  219
            |||||| |||||| | ||||||||||||| ||||||||| || |||||||||||||||||
Sbjct  120  AATGCAGCAGCAA-CTTCATGGATTTGTGTTAACCAATTTCTATAGAAAGGCCATTTGGA  178

Query  220  CGGCTGCAAAACGGCGTTAA  239
            ||||||||||||||||||||
Sbjct  179  CGGCTGCAAAACGGCGTTAA  198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36483631569


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5