BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G11000.1
Length=2480
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480280 jgi|Araly1|480280|fgenesh2_kg.3__2981__AT2G11000.1 3410 0.0
Ahg906024 jgi|Araly1|906024|Al_scaffold_0003_3152 366 4e-100
> Ahg480280 jgi|Araly1|480280|fgenesh2_kg.3__2981__AT2G11000.1
Length=2383
Score = 3410 bits (1846), Expect = 0.0
Identities = 2178/2333 (93%), Gaps = 43/2333 (2%)
Strand=Plus/Plus
Query 151 TTCTTCTATCCCTTCCGGTGATAATAACTCCGTCTGGGCCGATGTATCACCTCTCCTCTC 210
|||||||||||||||||||| |||||||||||||||||||||| || |||||||||||
Sbjct 83 TTCTTCTATCCCTTCCGGTG---ATAACTCCGTCTGGGCCGATGTTTCGCCTCTCCTCTC 139
Query 211 CGCCGCCTGCTCTGATCTTCAAGAAGGTGAACTCATAAATGGAGATAATTTCAATCTTTT 270
|||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 140 CGCCGCCTGCACTGATCTTCAAGAGGGTGAACTCATTAATGGAGATAATTTCAATCTTTT 199
Query 271 TGCTGCCATGTCTGCTTTAGAGATAATGGACCCAAAGATGGATTCTGGTATGGTGTCTAC 330
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 TGCTGCAATGTCTGCATTAGAGATAATGGACCCAAAGATGGATTCTGGTATGGTGTCTAC 259
Query 331 GTTTTATTCTATAGATGAAGCCATCGAAAGTGGTTTTGCGCCCGTCCCTATAAGTTCGGA 390
|||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 260 CTTTTATTCAATAGATGAAGCCATCGAAAGTGGTTTTGCGCCTGTACCTATAAGTTCTGA 319
Query 391 TAGTACTGTTAATGTGCAATCCATCATTGACATTATGGACCATCTCCTGGCGTGTGAGGC 450
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 320 TAGTACTGTTAATGTTCAATCCATCATTGACATTATGGATCATCTCCTGGCGTGCGAGGC 379
Query 451 AACATGGCACATGGGTCATTCATTGGCCCAAACTGTGTTTTCATGCATCTATGTTCTGAG 510
||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 380 AACGTGGCACATGGGTCACTCGTTGGCCCAAACTGTGTTTTCATGCATCTACGTTCTGAG 439
Query 511 GCCTGAGAGGACATCTTCACAGGCTCTATTACATTCTTATTGTAGGGTCATCCGAGCAAC 570
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 440 GCCTGAGAGGACATCTTCACAGGCTCTATTGCATTCTTATTGTAGGGTCATCCGAGCAAC 499
Query 571 TTGCAGGGCAGTTGTTTCTGTTGTTTCAGATGCGCGTACAAATGAAGAAGAGGATCTTTT 630
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 500 TTGCAGGGCAGTTGTTTCTGTTGTTTCAGATGCACGTACAAATGAGGAAGAGGATCTGTT 559
Query 631 TACGATGACATATGGTCTTCCTTTTAGTGGAGAAGAAGATGCCAAGGGCTTGTTACTCTT 690
||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 560 TACCATGACATACGGTCTTCCTTTTAGTGGAGATGAAGATGCCAAGGGCTTGTTACTTTT 619
Query 691 GAATGCGGTTGAAGAAACTATCTGTCGTCAGCTGCGTGCTTGTAAGGCCACAAGAAGGAG 750
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 620 GAATGCGGTTGAAGAAACAATCTGTCGTCAGCTGCGTGCTTGTAAGGCCACAAGAAGAAG 679
Query 751 AATGTTGGAAGATGCAGAATTGGAACCTCTACAAAGTAATCCCCATCTGGAAGAGAGTTT 810
| |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 680 AGTGTTAGAAGATGCAGAATTGGAACCTCTACAAACTGATCCCCATCTGGAAGAGAGTTT 739
Query 811 TTGCAAATCTCTGTTATGCCGGATACGTTTCCGTAAGCATTTTCTACATGCTCTTAATTG 870
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 740 TTGCAAAGCTCTGTTATGCCGGATACGTTTCCGTAAGCATTTTCTACACGCTCTTAATTG 799
Query 871 TATGAGACGACCACAAGGACGTGGCCTCGAATTGGCAAGGAAACATATAGGC-TATTGCA 929
||||||||||||||||||||||||||||||||||||||||||||| ||| || || ||||
Sbjct 800 TATGAGACGACCACAAGGACGTGGCCTCGAATTGGCAAGGAAACACATA-GCGTACTGCA 858
Query 930 TATCAGAGCTAGATTCTGTTCTGGA-TTCAGCAGAATTTCTAAGATTAGATATTTTCGAG 988
|||||||||||||||||||||| || || | ||||||| |||||||| ||||| ||||
Sbjct 859 TATCAGAGCTAGATTCTGTTCTAGAGTT-GGAAGAATTTTTAAGATTAAATATTGTCGAA 917
Query 989 AATGGCGTAAACGAGATAGAAGAAAGTACAACTGCTTCTGGTCGGTCCCCCATTGGATTT 1048
||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 918 AATGGCGGAAACGAGATAGAAGAAAGTACAACTGCTTCTGGTCGCTCCCCAATTGGATTT 977
Query 1049 GATCCTACTTTAAACAAAAGATTATCAGCTCCAACGCCGCCACGTGCCATTAAACTTCTT 1108
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 978 GATCCTACCTTAAACAAAAGATTATCAGCTCCAACGCCGCCACGTGCTATTAAACTTCTT 1037
Query 1109 TCTTGGAAAAAGGCTATTGACTATTATGTGAAACTTCTTCACAATCTGGATAAGATCTGT 1168
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1038 TCTTGGAAAAAGGCTATTGACTATTATGTGAAACTTCTTCACAATTTGGATCAGATTTGT 1097
Query 1169 GCATTTTCATTGGAACCAGATTTAGAGGCCGTCTTGGAGTTTGTGATTCAGTTTCAAAAA 1228
| ||| |||||||||||||||||||||||||| ||| ||||||||| || ||||||||||
Sbjct 1098 GTATTCTCATTGGAACCAGATTTAGAGGCCGTTTTGCAGTTTGTGACTCGGTTTCAAAAA 1157
Query 1229 TCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGCTTCTCCTTGTGCAAGATGGGAAA 1288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TCTCGTCCTGATTTGGTTGCTAGGGCTCATCTTCAGCTTCTCCTTGTGCAAGATGGGAAA 1217
Query 1289 CTTTACGGCCGTGATACCTTTTTGACAATTTGCGCCAGATCTCTTGCATTAGATGTCTCC 1348
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1218 CTTTACGGCCGTGATACCTTTTTGTCTATTTGCGCCAGATCTCTTGCATTAGATGTCTCC 1277
Query 1349 AAGAACCATGGCCTCCATACGAATGAGTACATTCTTCAACTTAATCAGTTGATGGTTAAT 1408
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AAGAACCATGGCCTTCATACGAATGAGTACATTCTTCAACTTAATCAGTTGATGGTTAAT 1337
Query 1409 CTACTTAAAATACTATGCGCTAATACCCCATGGCAGAGGCGTAAGCTTGGGAAAATCTTA 1468
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 CTGCTTAAAATACTCTGTGCTAATACCCCATGGCAGAGGCGTAAGCTTGGGAAAATCTTA 1397
Query 1469 AATGACTGGAGCGTATTCCATGTGCAGATGGGGATTGCTGTTGGTCAAATGATGCAGCAA 1528
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1398 AACGACTGGAGCGTATTCCATGTGCAGATGGGGATTACTGTTGGTCAAATGATGCAGCAA 1457
Query 1529 GATACATCACGCAG-TTCGAAAAATGGGGATAAGTCTCTACTCATTTTAAACCATATATA 1587
||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1458 GATACATCACG-TGCTTCGAAAAATGGGGACAAGTCTCTACTCATTTTAAACCATATATA 1516
Query 1588 TGGTGGATTAGAAGAGCAAATTAATTGGGTGGCAATTCGCTTTCTCATGCTGGGATTTGA 1647
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1517 TGGTGGATTAGATGAGCAAATTAATTGGGTGGCCATTCGCTTTCTCATGCTGGGATTTGA 1576
Query 1648 CCTAGACCTCTACTCGCCAAGTGAATATTGCATGGTATACTGGTACATGTATATTATACT 1707
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1577 CCTAGACCTCTACTCTCCAAGTGAATATTGCATGGTGTACTGGTACATGTATATTATACT 1636
Query 1708 CTGGAAGCTTGCCGAAAGAGCACGTTTCAGGGTCTTAATCGTTGTGAACACTGAGGAAAG 1767
||||||||||| ||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 1637 ATGGAAGCTTGCTGAAAGAGCACGTTTCAGGGTCCTAATCATTGTTAACACTGAGGAAAG 1696
Query 1768 AAAAGCAAAGAGGAATAAGGAGTATTCTAGGGACATGGCTCGGGAAGATCGGATTAGTCT 1827
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1697 AAAAGCAAAGAGGAATAAGGAGTATTCTAGGGACATGGCTCGGGAAGATCAGATTAGTCT 1756
Query 1828 ATGGGTATTGTTTCTCAAATGTCAGACCTGTCTTGCACAAGGCCTCACAGTGATGATTGC 1887
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1757 GTGGGTGTTGTTTCTCAAATGTCAGACTTGCCTTGCACAAGGCCTCACAGTGATGATTGC 1816
Query 1888 AGCTTTGAGAAATGAAGGAATGTCTTTAAAGAGTCAAGGACCTTTTAATACCGAAAATGA 1947
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1817 TGCTTTGAGAAATGAAGGGATGTGTTTAAAGAGTCAAGGACCTTTTAATACCGAAAATGA 1876
Query 1948 GAAATTTATACAGCATTTTGAACTCCTTCAGAAGGCATCCCTTCCAGAATATGACGCATA 2007
||||||| | ||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 1877 GAAATTTGTTCAGCATTTTGAACTCCTCCAGAAGGCATCGCTTCCCGAATATGACGCATA 1936
Query 2008 TGAATCGTTCTCAAAATCCACATCCCATGCTCGTCTCGACTATCTTCCTATGTATGAGTA 2067
|||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1937 TGAATCATTCTCAGAATCCACATCTCATGCTCGTCTCGACTTTCTTCCTATGTATGAGTA 1996
Query 2068 CTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTCGGTTACGCCAACGATCCTGA 2127
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1997 CTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTTGGTTATGCCAATGACCCTGA 2056
Query 2128 TAAGCTGGCTGAAGT-CACGGGATTAGAGAAAGTCGCGGAACGCAATATTGTTGCTGTGA 2186
||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 TAAACTGGCTGAAGTCCA-AGGATTAGAGAAAGTCGCGGAACGCAATATTGTTGCTGTGA 2115
Query 2187 ACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGAGTTCACCCATCATCCTTATT 2246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2116 ACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGAGTTCACCCATCATCCTTATT 2175
Query 2247 TCGCTACTGCTGTTGTTCGTAGATCTTGAAACTCTCTTTTCCGTTATTCATTTGTTACTA 2306
|||| ||||||||||| |||||| ||||||||| | | | || | |
Sbjct 2176 TCGCCACTGCTGTTGTCCGTAGAGCTTGAAACT-TAT--------A--CA------A--A 2216
Query 2307 TACAAATCCAATTTTGGGACTGACCCTATTTAGTTTTGGAAACAAGTGTgctttttaagt 2366
| ||| | ||| ||||| |||||||| ||||||||||||||||||||||||| |||
Sbjct 2217 TCCAA-T----TTT-GGGACAAACCCTATTAAGTTTTGGAAACAAGTGTGCTTTTTTAGT 2270
Query 2367 ttcctctctcagcttttatcatgcttttt-gctccttttttttttttt-----AA-TTGT 2419
||||||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 2271 TTCCTCTCTCAGCTTTTATCATGCTTTTTCGCTCCTTTTTTTTTTTTTTCCCTAAATTGT 2330
Query 2420 TCCTTTTATAAATTTATTGTAAATTTTTGTTGTTCTAAGAAGTTTAATTATTA 2472
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2331 TCCTTTTATAATTTTATTGTAAAATTTTGTTGTTCTAAGAAGTTGAATTATTA 2383
> Ahg906024 jgi|Araly1|906024|Al_scaffold_0003_3152
Length=228
Score = 366 bits (198), Expect = 4e-100
Identities = 219/229 (96%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 2048 TATCTTCCTATGTATGAGTACTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTC 2107
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TATCTTCCTATGTATGAGTACTTTCACGATGCTCAAAAGATCGCTAAGGACATAAAGGTT 60
Query 2108 GGTTACGCCAACGATCCTGATAAGCTGGCTGAAGT-CACGGGATTAGAGAAAGTCGCGGA 2166
||||| ||||| || |||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 61 GGTTATGCCAATGACCCTGATAAACTGGCTGAAGTCCA-AGGATTAGAGAAAGTCGCGGA 119
Query 2167 ACGCAATATTGTTGCTGTGAACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGA 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACGCAATATTGTTGCTGTGAACCTTTTCTGTCAAGACCGTTCGCTTAAGGTATCGTTTGA 179
Query 2227 GTTCACCCATCATCCTTATTTCGCTACTGCTGTTGTTCGTAGATCTTGA 2275
|||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 180 GTTCACCCATCATCCTTATTTCGCCACTGCTGTTGTCCGTAGATCTTGA 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93473461230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5