BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G11200.1 Length=465 Score E Sequences producing significant alignments: (Bits) Value Ahg341820 jgi|Araly1|341820|fgenesh1_pg.C_scaffold_3001583 375 1e-103 Ahg929517 jgi|Araly1|929517|scaffold_301974.1 339 1e-92 > Ahg341820 jgi|Araly1|341820|fgenesh1_pg.C_scaffold_3001583 Length=873 Score = 375 bits (203), Expect = 1e-103 Identities = 380/461 (82%), Gaps = 30/461 (7%) Strand=Plus/Plus Query 1 ATGAGAGATTTAACAACAGCGATGTCCGATCTTCCACGAGATTTGGAAGAGGAAGTGCTC 60 |||||||||| |||||| |||||||||||||| |||| |||| ||| ||||||||||||| Sbjct 1 ATGAGAGATTCAACAACGGCGATGTCCGATCTGCCACAAGATGTGGTAGAGGAAGTGCTC 60 Query 61 TCTAG-GGTCCAGTTAG-CATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAGTGGAACC 118 ||||| | ||| ||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCTAGTGTTCC-GTT-GACATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAGTGGAACA 118 Query 119 GTCGTTTATCCAAATATCG---CTTTACAAAGAAGTATATTCGTAAATCAAGATCAGCAA 175 || || ||||||| |||| ||||||||||||| | || |||||||||||||||| || Sbjct 119 GT--TT-ATCCAAACATCGGAGCTTTACAAAGAAGCACATCCGTAAATCAAGATCAGAAA 175 Query 176 CGGCGGATAAAGAGTTTTTAGCGATCATGATGTTGGATTCTAGTCTATATCTAATGAATG 235 || | | ||||||||| | |||||||||||| ||||||||||| | || ||||| | || Sbjct 176 CGAAGAAGAAAGAGTTTCTGGCGATCATGATGATGGATTCTAGTGTCTACCTAATTAGTG 235 Query 236 TTGTTATTGACAAGATCGACAACGAAAACAACGTTGAATCATCTATAGAGAGAAAAGGTA 295 ||| ||| ||||| ||| | || |||||| | | | | | | || ||| |||| Sbjct 236 TTGGAATTCACAAG---GACGATGACTACAACGCT-A-T-A---A-ACCGA-AAA-GGTA 283 Query 296 AACTGATTAGCGTAAACGACGCAGATGG---AGTCGATATAA-TAAGCGTCGTCCACTAT 351 ||||||||||| ||||| | | |||||| ||| |||||| || ||||| |||||| | Sbjct 284 AACTGATTAGCCTAAACAATGTAGATGGTGGAGTTGATATATCTA-GCGTCTTCCACTGT 342 Query 352 AATGCTTTGTTGTTATGC-CTCACCAAAGAAAAAACACCGAAGGCTTGTGGTTTGGAACC 410 | | ||||||||||||| | ||||||||| |||||||||| |||||||||||||||||| Sbjct 343 AGCGGTTTGTTGTTATGCAC-CACCAAAGATAAAACACCGA-GGCTTGTGGTTTGGAACC 400 Query 411 CTTGTCGTGGGCAATCAAGGTGGATCGAAACTGCTTATCGT 451 ||| ||||||| || ||||||||||||||||| |||||||| Sbjct 401 CTTATCGTGGGAAAACAAGGTGGATCGAAACTACTTATCGT 441 > Ahg929517 jgi|Araly1|929517|scaffold_301974.1 Length=1402 Score = 339 bits (183), Expect = 1e-92 Identities = 365/449 (81%), Gaps = 27/449 (6%) Strand=Plus/Plus Query 1 ATGAGAGATTTAACAACAGCGATGTCCGATCTTCCACGAGATTTGGAAGAGGAAGTGCTC 60 |||||||||| |||||| ||||||||||||||||||| |||| ||| ||||||||||||| Sbjct 21 ATGAGAGATTCAACAACGGCGATGTCCGATCTTCCACAAGATATGGTAGAGGAAGTGCTC 80 Query 61 TCTAGGG-TCCAGTTAGCATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAG-TGGAACC 118 ||||||| ||| |||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct 81 TCTAGGGTTCC-GTTAACATCTCTTAGAGCAGTGCGAACTACTTGCAAAA-GCTGGAACA 138 Query 119 GTCGTTTATCCAAATA-TCG---CTTTACAAAGAAGTATATTCGTAAATCAAGATCAGCA 174 || || || |||| | ||| |||||||| |||| | ||||| ||||||||| ||||| Sbjct 139 GT--TT-ATTCAAA-ACTCGGAGCTTTACAAGGAAGCACATTCGCAAATCAAGAGCAGCA 194 Query 175 ACGGCGGATAAAGAGTTTTTAGCGATCATGATGTTGGATTCTAGTCTATATCTAATGAAT 234 ||| | | | ||||| | | || ||||||||| | ||||||||| | |||||||||| | Sbjct 195 ACGAAGAAGAGAGAGTGTATGGCAATCATGATGATCGATTCTAGTGTTTATCTAATGAGT 254 Query 235 GTTGTTATTGACAAG--AT-CGACAACGAAA-ACAACGTTGAATCATCTATAGAGAGAAA 290 ||| | || | | || | |||| || ||||||||||||||| |||| | |||| Sbjct 255 GTTAAT-TTC-CGTGGGATTC-ACAAT-AACGACAACGTTGAATCATTTATAAACCGAAA 310 Query 291 AGGTAAACTGATTAGCGTAAACGACGCAGATGGAGTCGATATAA-TAAGCGTCGTCCACT 349 ||||||| | |||||| ||||| | | ||||||||| |||||| || ||||| |||||| Sbjct 311 AGGTAAATTTATTAGCCTAAACAATGTAGATGGAGTTGATATATCTA-GCGTCTTCCACT 369 Query 350 ATAATGCTTTGTTGTTATGC-CTCACCAAAGAA-AAAACACCGAAGGCTTGTGGTTTGGA 407 || || ||||||||||||| | |||||||||| ||||| | || ||||| |||||| || Sbjct 370 CTAGTGGTTTGTTGTTATGCAC-CACCAAAGAAGAAAACTC-GA-GGCTTATGGTTTTGA 426 Query 408 ACCCTTGTCGTGGGCAATCAAGGTGGATC 436 | |||| |||||| ||| ||||||||||| Sbjct 427 ATCCTTATCGTGGCCAAACAAGGTGGATC 455 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16826614749 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5