BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G11200.1
Length=465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341820 jgi|Araly1|341820|fgenesh1_pg.C_scaffold_3001583 375 1e-103
Ahg929517 jgi|Araly1|929517|scaffold_301974.1 339 1e-92
> Ahg341820 jgi|Araly1|341820|fgenesh1_pg.C_scaffold_3001583
Length=873
Score = 375 bits (203), Expect = 1e-103
Identities = 380/461 (82%), Gaps = 30/461 (7%)
Strand=Plus/Plus
Query 1 ATGAGAGATTTAACAACAGCGATGTCCGATCTTCCACGAGATTTGGAAGAGGAAGTGCTC 60
|||||||||| |||||| |||||||||||||| |||| |||| ||| |||||||||||||
Sbjct 1 ATGAGAGATTCAACAACGGCGATGTCCGATCTGCCACAAGATGTGGTAGAGGAAGTGCTC 60
Query 61 TCTAG-GGTCCAGTTAG-CATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAGTGGAACC 118
||||| | ||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTAGTGTTCC-GTT-GACATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAGTGGAACA 118
Query 119 GTCGTTTATCCAAATATCG---CTTTACAAAGAAGTATATTCGTAAATCAAGATCAGCAA 175
|| || ||||||| |||| ||||||||||||| | || |||||||||||||||| ||
Sbjct 119 GT--TT-ATCCAAACATCGGAGCTTTACAAAGAAGCACATCCGTAAATCAAGATCAGAAA 175
Query 176 CGGCGGATAAAGAGTTTTTAGCGATCATGATGTTGGATTCTAGTCTATATCTAATGAATG 235
|| | | ||||||||| | |||||||||||| ||||||||||| | || ||||| | ||
Sbjct 176 CGAAGAAGAAAGAGTTTCTGGCGATCATGATGATGGATTCTAGTGTCTACCTAATTAGTG 235
Query 236 TTGTTATTGACAAGATCGACAACGAAAACAACGTTGAATCATCTATAGAGAGAAAAGGTA 295
||| ||| ||||| ||| | || |||||| | | | | | | || ||| ||||
Sbjct 236 TTGGAATTCACAAG---GACGATGACTACAACGCT-A-T-A---A-ACCGA-AAA-GGTA 283
Query 296 AACTGATTAGCGTAAACGACGCAGATGG---AGTCGATATAA-TAAGCGTCGTCCACTAT 351
||||||||||| ||||| | | |||||| ||| |||||| || ||||| |||||| |
Sbjct 284 AACTGATTAGCCTAAACAATGTAGATGGTGGAGTTGATATATCTA-GCGTCTTCCACTGT 342
Query 352 AATGCTTTGTTGTTATGC-CTCACCAAAGAAAAAACACCGAAGGCTTGTGGTTTGGAACC 410
| | ||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||
Sbjct 343 AGCGGTTTGTTGTTATGCAC-CACCAAAGATAAAACACCGA-GGCTTGTGGTTTGGAACC 400
Query 411 CTTGTCGTGGGCAATCAAGGTGGATCGAAACTGCTTATCGT 451
||| ||||||| || ||||||||||||||||| ||||||||
Sbjct 401 CTTATCGTGGGAAAACAAGGTGGATCGAAACTACTTATCGT 441
> Ahg929517 jgi|Araly1|929517|scaffold_301974.1
Length=1402
Score = 339 bits (183), Expect = 1e-92
Identities = 365/449 (81%), Gaps = 27/449 (6%)
Strand=Plus/Plus
Query 1 ATGAGAGATTTAACAACAGCGATGTCCGATCTTCCACGAGATTTGGAAGAGGAAGTGCTC 60
|||||||||| |||||| ||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 21 ATGAGAGATTCAACAACGGCGATGTCCGATCTTCCACAAGATATGGTAGAGGAAGTGCTC 80
Query 61 TCTAGGG-TCCAGTTAGCATCTCTTAGAGCAGTGCGAACTACTTGCAAAAAG-TGGAACC 118
||||||| ||| |||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 81 TCTAGGGTTCC-GTTAACATCTCTTAGAGCAGTGCGAACTACTTGCAAAA-GCTGGAACA 138
Query 119 GTCGTTTATCCAAATA-TCG---CTTTACAAAGAAGTATATTCGTAAATCAAGATCAGCA 174
|| || || |||| | ||| |||||||| |||| | ||||| ||||||||| |||||
Sbjct 139 GT--TT-ATTCAAA-ACTCGGAGCTTTACAAGGAAGCACATTCGCAAATCAAGAGCAGCA 194
Query 175 ACGGCGGATAAAGAGTTTTTAGCGATCATGATGTTGGATTCTAGTCTATATCTAATGAAT 234
||| | | | ||||| | | || ||||||||| | ||||||||| | |||||||||| |
Sbjct 195 ACGAAGAAGAGAGAGTGTATGGCAATCATGATGATCGATTCTAGTGTTTATCTAATGAGT 254
Query 235 GTTGTTATTGACAAG--AT-CGACAACGAAA-ACAACGTTGAATCATCTATAGAGAGAAA 290
||| | || | | || | |||| || ||||||||||||||| |||| | ||||
Sbjct 255 GTTAAT-TTC-CGTGGGATTC-ACAAT-AACGACAACGTTGAATCATTTATAAACCGAAA 310
Query 291 AGGTAAACTGATTAGCGTAAACGACGCAGATGGAGTCGATATAA-TAAGCGTCGTCCACT 349
||||||| | |||||| ||||| | | ||||||||| |||||| || ||||| ||||||
Sbjct 311 AGGTAAATTTATTAGCCTAAACAATGTAGATGGAGTTGATATATCTA-GCGTCTTCCACT 369
Query 350 ATAATGCTTTGTTGTTATGC-CTCACCAAAGAA-AAAACACCGAAGGCTTGTGGTTTGGA 407
|| || ||||||||||||| | |||||||||| ||||| | || ||||| |||||| ||
Sbjct 370 CTAGTGGTTTGTTGTTATGCAC-CACCAAAGAAGAAAACTC-GA-GGCTTATGGTTTTGA 426
Query 408 ACCCTTGTCGTGGGCAATCAAGGTGGATC 436
| |||| |||||| ||| |||||||||||
Sbjct 427 ATCCTTATCGTGGCCAAACAAGGTGGATC 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16826614749
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5