BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G11520.1
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480281 jgi|Araly1|480281|fgenesh2_kg.3__2982__AT2G11520.1 2789 0.0
> Ahg480281 jgi|Araly1|480281|fgenesh2_kg.3__2982__AT2G11520.1
Length=1936
Score = 2789 bits (1510), Expect = 0.0
Identities = 1825/1972 (93%), Gaps = 41/1972 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaCAGAACACGAATTTTCAAAGTTTTCCACACGATGTCTTCCATAAGATCGTTAC 60
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AAAGAAACAGAACACGAATTTTCAAAGTTTTCCACACGATGTCTTCCATGAGATCGTTAC 60
Query 61 CACGTCCCTAACTCTTCTCCTTCAGACAAAAGTACTTTAGTTATTCTTCTTTCTTTTGCC 120
||||||||||||||| ||||||||||||||| ||| || ||| ||||||||| ||||
Sbjct 61 CACGTCCCTAACTCTCCTCCTTCAGACAAAA-TAC-TT--TTAGTCTTCTTTC-TTTGGT 115
Query 121 ATACTTCTCTGAAAACAGAATAAATCTTTTGTATTCGGTCAAACTGATTCAAATACTGTA 180
|||||| |||||||||| |||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 116 ATACTTGTCTGAAAACAAAATAAATC-TTTGTTTTCGGTCAAACTGATTCATATACTGTA 174
Query 181 CAGTCAAGTCAAAGCTACAAGATCGTGTTCCAGGTTTAGAGAAAATCTTCTGAACTCAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 175 CAGTCAAGTCAAAGCTACAAGATCGTGTTCCAGGTTTAGAGAAAATCTTCTGAACTC-TA 233
Query 241 AGATTCTCATAACTGAGTTTATAAATGGATAATTGAAGTTGTGTATTTTGTTGATA-AAA 299
|||||||||||| ||||||||||||||| | |||||||||| |||||||||||||| |||
Sbjct 234 AGATTCTCATAATTGAGTTTATAAATGGTTTATTGAAGTTGAGTATTTTGTTGATATAAA 293
Query 300 CCAAAACCATGGGTGGAGATGATTTGAGCTTCACAAGATTGGTGAT-TACTGCTTTGTTT 358
||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 294 -CAAAATTATGGGTGGAGATGATTTCAGCTTCACAAGATTGGTG-TGTACTGCTTTGTTT 351
Query 359 GGTCTGTTAATGTTGTTACAAATCAAGGAAACTTCTGCATCAACATCCTTTGTAAGCTCG 418
|||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 352 GGTCTGTTAATGTTATTGCAAATCAAGGAAACTTCTGCGTCAGCATCCTTTGTAAGCTCG 411
Query 419 AGTGTTTGTAAGTCTGATCACTTGACCTACACAAAGCCTTATCAACAAGGGAGTTTGTTC 478
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGCGTTTGTCGGTCTGATCACTTGACCTACACAAAGCCTTATCAACAAGGGAGTTTGTTC 471
Query 479 ACAATTAACGGTAATCCGGTGGAGAAACTCCGGTTTTGCGAAGCTTTACGGTTTCACAAA 538
|| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 472 ACTATTAACGGGAATCCGGTGGAGAAAGTCCGGTTTTGCGAAGCCTTACGGTTTCACAAA 531
Query 539 GCCAATGGTTGTATCTTTGAGGATTCTTT-TAGTGATGACTTCTGCACAATTCACTCTCT 597
||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||| |||
Sbjct 532 GCCAATGGTTGTATCTTTGGGGATTCTTTCT-GTGATGACTTCTGCACAGTTCACTATCT 590
Query 598 ACTAGGGAGAAGGTTTTTGGAAGAAAAAACTGTAAAAGATTCCAAAAATAGTAAGCCTAA 657
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 591 ACTAGGGAGAAGGTTTTTGGAAGAGAAATCTGTAAAAGATTCCAAAAATAGTAAGCCTAA 650
Query 658 AACTGAATATAGCCATGTTAAAGTTAGCATAGCAGGAAGTGGGTTTCTTCTCTTGTGTTG 717
| |||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 651 ATCTGAATATAGCCATGTTAAAGTCAGCATGGCAGGAAGCGGGTTTCTTCTCTTGTGTTG 710
Query 718 CGCTCTTTGTTGTCCTTGCTTTCATAAAGAGAGGAAAGCAAATAGTCATGAAGTTCTACC 777
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 711 CGCGCTTTGTTGTCCTTGCTTCCATAAGGAGAGGAAAGCAAATAGTCATGAAGTTCTACC 770
Query 778 TAAAGAATCTAACTCAGTGCACCAAGTTTCTTCTTTTGAAATGAGCCCTTCTTCTGAGAA 837
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 771 CAAAGAATCTAACTCAGTGCACCAAGTTTCCTCTTTTGAAATGAGCCCTTCTTCTGAGAA 830
Query 838 GATTCCACAAAGTCCATTCCGAGCACCACCAAGTCCATCCCGCGTACCGCAGAGTCCATC 897
|||||| | ||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 831 GATTCCGCCTAGTCCATTCCGGGCACCACCAAGTCCATCCCGTGTACCGCAAAGTCCATC 890
Query 898 TAGATATGCTATGTCCCCAAGGCCTAGTAGACTGGGACCTTTGAATCTGACCATGAGTCA 957
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 891 TAGATATGCTATGTCCCCAAGGCCTAGTAGACTGGGACCCTTGAATCTGTCCATGAGTCA 950
Query 958 GATTAATACAGCAACTGGTAATTT-TGCAGACAGTCACCAAATTGGTGAAGGAGGCTTTG 1016
|||||| ||||||| | ||||| | |||||||||| ||||| ||||||||||||||||
Sbjct 951 AATTAATGCAGCAACCAGCAATTTCT-CAGACAGTCATCAAATCGGTGAAGGAGGCTTTG 1009
Query 1017 GTGTAGTCTTTAAAGGCGTTCTAGATGATGGCCAGGTTGTTGCCATAAAACGAGCCAAAA 1076
| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1010 GGGTAGTCTATAAAGGCTTTCTAGATGATGGCCAGGTGGTTGCCATAAAACGAGCAAAAA 1069
Query 1077 AGGAACACTTTGAGAATCTGCGAACGGAGTTTAAAAGTGAAGTTGACCTTTTGTCTAAAA 1136
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1070 AGGAACACTTTGAGAATCTGCGAACGGAATTCAAAAGTGAAGTTGACCTTTTGTCTAAAA 1129
Query 1137 TTGGCCACCGGAACCTAGTGAAGCTTCTTGGTTATGTTGACAAAGGAGACGAGCGACTTA 1196
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1130 TTGGCCACCGGAATCTAGTGAAGCTTCTTGGTTATGTTGATAAAGGAGACGAGCGACTTA 1189
Query 1197 TCATAACTGAGTATGTCAGAAATGGTACACTCCGCGATCACTTGGACGGTGCTCGTGGAA 1256
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1190 TCATAACCGAGTATGTCAGAAATGGTACACTCCGCGATCACTTGGATGGTGCTCGTGGAA 1249
Query 1257 CTAAACTTAATTTCAATCAAAGGTTGGAGATTGTTATTGATGTCTGCCATGGCTTAACCT 1316
||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||
Sbjct 1250 CTAAACTTAATTTCAATCAGAGGTTGGAGATTGTGATTGATGTCTGCCATGGATTGACCT 1309
Query 1317 ATCTCCATTCTTATGCAGAAAGACAGATAATTCACCGTGACATAAAATCGTCGAACATTC 1376
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1310 ATCTCCATTCTTATGCAGAAAGACAGATAATCCACCGTGACATAAAATCCTCAAACATTC 1369
Query 1377 TACTCACAGATAGCATGAGAGCCAAAGTAGCAGACTTCGGCTTTGCGAGAGGCGGTCCTA 1436
||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1370 TACTCACGGATAGCATGAGAGCCAAAGTGGCAGACTTCGGGTTTGCAAGAGGCGGTCCTA 1429
Query 1437 CTGACTCGAACCAGACTCACATTTTAACTCAAGTGAAAGGAACCGTTGGTTATCTCGATC 1496
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 CTGACTCGAACCAGACCCACATTTTAACTCAAGTGAAAGGAACCGTTGGTTATCTCGATC 1489
Query 1497 CTGAGTACATGAAAACTTATCATCTCACTGCTAAAAGCGATGTTTACTCGTTCGGGATTT 1556
|||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 1490 CTGAGTACATGAGGACTTATCAGCTCACTGCCAAAAGCGATGTTTACTCATTCGGGATTT 1549
Query 1557 TGCTTGTGGAGATACTCACAGGCCGTCGTCCAGTGGAGGCCAAGCGACTTCCTGATGAGA 1616
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1550 TGCTTGTGGAGATACTCACAGGCCGTCGTCCAGTGGAGGCCAAGCGACCTCATGATGAGA 1609
Query 1617 GGATTACGGTCCGATGGGCATTCGACAAGTACAATGAAGGGCGAGTTTTTGAACTAGTGG 1676
||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1610 GGATTACAGTTCGATGGGCATTCGACAAGTACAATGAAGGGAGAGTTTTTGAACTAGTGG 1669
Query 1677 ATCCTAACGCGAGGGAACGAGTAGATGAGAAGATACTAAGGAAGATGTTTAGTTTGGCAT 1736
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1670 ATCCAAACGCGAGGGAACGAGTAGATGAGAAGATACTAAGAAAGATGTTTAGTTTGGCAT 1729
Query 1737 TTCAATGTGCTGCTCCTACTAAAAAAGAGCGGCCTGACATGGAAGCTGTTGGGAAGCAGC 1796
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1730 TTCAATGTGCTGCTCCTACCAAAAAAGAGCGGCCGGACATGGAAGCTGTTGGGAAGCAGC 1789
Query 1797 TTTGGGCTATAAGATCAAGTTATCTCAGGCGGTCAATGGAATAAGACAAG-TGTTCACAC 1855
|||||||||||||||||||||||||||||||||||||||||||| |||| || | | |
Sbjct 1790 TTTGGGCTATAAGATCAAGTTATCTCAGGCGGTCAATGGAATAAAACAAAATGCT-ATA- 1847
Query 1856 GTTACAACCACCAAAATGCTATAGTCTCTCTGTTGTTAGATAATATCACCTCTTTTACAT 1915
|| | | | || | | || | | | | ||| | | |||||||||||||
Sbjct 1848 GT--CT-CT-C-----TG-T-T-GT-TA---GAT---A-ATA-T-T-ACCTCTTTTACAT 1884
Query 1916 TTTGCTATCCAACCACTTCTTCTTCAGATTTGAAATGAGATGTCTTATTCAT 1967
|||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1885 TTTGCTATGAAACCACTTCTTCGTCAGATTTGAAATGAGATGTCTTATTCAT 1936
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73971255790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5