BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G11520.1 Length=1968 Score E Sequences producing significant alignments: (Bits) Value Ahg480281 jgi|Araly1|480281|fgenesh2_kg.3__2982__AT2G11520.1 2789 0.0 > Ahg480281 jgi|Araly1|480281|fgenesh2_kg.3__2982__AT2G11520.1 Length=1936 Score = 2789 bits (1510), Expect = 0.0 Identities = 1825/1972 (93%), Gaps = 41/1972 (2%) Strand=Plus/Plus Query 1 aaaaaaaCAGAACACGAATTTTCAAAGTTTTCCACACGATGTCTTCCATAAGATCGTTAC 60 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 AAAGAAACAGAACACGAATTTTCAAAGTTTTCCACACGATGTCTTCCATGAGATCGTTAC 60 Query 61 CACGTCCCTAACTCTTCTCCTTCAGACAAAAGTACTTTAGTTATTCTTCTTTCTTTTGCC 120 ||||||||||||||| ||||||||||||||| ||| || ||| ||||||||| |||| Sbjct 61 CACGTCCCTAACTCTCCTCCTTCAGACAAAA-TAC-TT--TTAGTCTTCTTTC-TTTGGT 115 Query 121 ATACTTCTCTGAAAACAGAATAAATCTTTTGTATTCGGTCAAACTGATTCAAATACTGTA 180 |||||| |||||||||| |||||||| ||||| |||||||||||||||||| |||||||| Sbjct 116 ATACTTGTCTGAAAACAAAATAAATC-TTTGTTTTCGGTCAAACTGATTCATATACTGTA 174 Query 181 CAGTCAAGTCAAAGCTACAAGATCGTGTTCCAGGTTTAGAGAAAATCTTCTGAACTCAAA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 175 CAGTCAAGTCAAAGCTACAAGATCGTGTTCCAGGTTTAGAGAAAATCTTCTGAACTC-TA 233 Query 241 AGATTCTCATAACTGAGTTTATAAATGGATAATTGAAGTTGTGTATTTTGTTGATA-AAA 299 |||||||||||| ||||||||||||||| | |||||||||| |||||||||||||| ||| Sbjct 234 AGATTCTCATAATTGAGTTTATAAATGGTTTATTGAAGTTGAGTATTTTGTTGATATAAA 293 Query 300 CCAAAACCATGGGTGGAGATGATTTGAGCTTCACAAGATTGGTGAT-TACTGCTTTGTTT 358 ||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||||| Sbjct 294 -CAAAATTATGGGTGGAGATGATTTCAGCTTCACAAGATTGGTG-TGTACTGCTTTGTTT 351 Query 359 GGTCTGTTAATGTTGTTACAAATCAAGGAAACTTCTGCATCAACATCCTTTGTAAGCTCG 418 |||||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||| Sbjct 352 GGTCTGTTAATGTTATTGCAAATCAAGGAAACTTCTGCGTCAGCATCCTTTGTAAGCTCG 411 Query 419 AGTGTTTGTAAGTCTGATCACTTGACCTACACAAAGCCTTATCAACAAGGGAGTTTGTTC 478 || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 AGCGTTTGTCGGTCTGATCACTTGACCTACACAAAGCCTTATCAACAAGGGAGTTTGTTC 471 Query 479 ACAATTAACGGTAATCCGGTGGAGAAACTCCGGTTTTGCGAAGCTTTACGGTTTCACAAA 538 || |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 472 ACTATTAACGGGAATCCGGTGGAGAAAGTCCGGTTTTGCGAAGCCTTACGGTTTCACAAA 531 Query 539 GCCAATGGTTGTATCTTTGAGGATTCTTT-TAGTGATGACTTCTGCACAATTCACTCTCT 597 ||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||| ||| Sbjct 532 GCCAATGGTTGTATCTTTGGGGATTCTTTCT-GTGATGACTTCTGCACAGTTCACTATCT 590 Query 598 ACTAGGGAGAAGGTTTTTGGAAGAAAAAACTGTAAAAGATTCCAAAAATAGTAAGCCTAA 657 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 591 ACTAGGGAGAAGGTTTTTGGAAGAGAAATCTGTAAAAGATTCCAAAAATAGTAAGCCTAA 650 Query 658 AACTGAATATAGCCATGTTAAAGTTAGCATAGCAGGAAGTGGGTTTCTTCTCTTGTGTTG 717 | |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 651 ATCTGAATATAGCCATGTTAAAGTCAGCATGGCAGGAAGCGGGTTTCTTCTCTTGTGTTG 710 Query 718 CGCTCTTTGTTGTCCTTGCTTTCATAAAGAGAGGAAAGCAAATAGTCATGAAGTTCTACC 777 ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 711 CGCGCTTTGTTGTCCTTGCTTCCATAAGGAGAGGAAAGCAAATAGTCATGAAGTTCTACC 770 Query 778 TAAAGAATCTAACTCAGTGCACCAAGTTTCTTCTTTTGAAATGAGCCCTTCTTCTGAGAA 837 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 771 CAAAGAATCTAACTCAGTGCACCAAGTTTCCTCTTTTGAAATGAGCCCTTCTTCTGAGAA 830 Query 838 GATTCCACAAAGTCCATTCCGAGCACCACCAAGTCCATCCCGCGTACCGCAGAGTCCATC 897 |||||| | ||||||||||| |||||||||||||||||||| |||||||| |||||||| Sbjct 831 GATTCCGCCTAGTCCATTCCGGGCACCACCAAGTCCATCCCGTGTACCGCAAAGTCCATC 890 Query 898 TAGATATGCTATGTCCCCAAGGCCTAGTAGACTGGGACCTTTGAATCTGACCATGAGTCA 957 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 891 TAGATATGCTATGTCCCCAAGGCCTAGTAGACTGGGACCCTTGAATCTGTCCATGAGTCA 950 Query 958 GATTAATACAGCAACTGGTAATTT-TGCAGACAGTCACCAAATTGGTGAAGGAGGCTTTG 1016 |||||| ||||||| | ||||| | |||||||||| ||||| |||||||||||||||| Sbjct 951 AATTAATGCAGCAACCAGCAATTTCT-CAGACAGTCATCAAATCGGTGAAGGAGGCTTTG 1009 Query 1017 GTGTAGTCTTTAAAGGCGTTCTAGATGATGGCCAGGTTGTTGCCATAAAACGAGCCAAAA 1076 | ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1010 GGGTAGTCTATAAAGGCTTTCTAGATGATGGCCAGGTGGTTGCCATAAAACGAGCAAAAA 1069 Query 1077 AGGAACACTTTGAGAATCTGCGAACGGAGTTTAAAAGTGAAGTTGACCTTTTGTCTAAAA 1136 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1070 AGGAACACTTTGAGAATCTGCGAACGGAATTCAAAAGTGAAGTTGACCTTTTGTCTAAAA 1129 Query 1137 TTGGCCACCGGAACCTAGTGAAGCTTCTTGGTTATGTTGACAAAGGAGACGAGCGACTTA 1196 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1130 TTGGCCACCGGAATCTAGTGAAGCTTCTTGGTTATGTTGATAAAGGAGACGAGCGACTTA 1189 Query 1197 TCATAACTGAGTATGTCAGAAATGGTACACTCCGCGATCACTTGGACGGTGCTCGTGGAA 1256 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1190 TCATAACCGAGTATGTCAGAAATGGTACACTCCGCGATCACTTGGATGGTGCTCGTGGAA 1249 Query 1257 CTAAACTTAATTTCAATCAAAGGTTGGAGATTGTTATTGATGTCTGCCATGGCTTAACCT 1316 ||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |||| Sbjct 1250 CTAAACTTAATTTCAATCAGAGGTTGGAGATTGTGATTGATGTCTGCCATGGATTGACCT 1309 Query 1317 ATCTCCATTCTTATGCAGAAAGACAGATAATTCACCGTGACATAAAATCGTCGAACATTC 1376 ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct 1310 ATCTCCATTCTTATGCAGAAAGACAGATAATCCACCGTGACATAAAATCCTCAAACATTC 1369 Query 1377 TACTCACAGATAGCATGAGAGCCAAAGTAGCAGACTTCGGCTTTGCGAGAGGCGGTCCTA 1436 ||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||| Sbjct 1370 TACTCACGGATAGCATGAGAGCCAAAGTGGCAGACTTCGGGTTTGCAAGAGGCGGTCCTA 1429 Query 1437 CTGACTCGAACCAGACTCACATTTTAACTCAAGTGAAAGGAACCGTTGGTTATCTCGATC 1496 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1430 CTGACTCGAACCAGACCCACATTTTAACTCAAGTGAAAGGAACCGTTGGTTATCTCGATC 1489 Query 1497 CTGAGTACATGAAAACTTATCATCTCACTGCTAAAAGCGATGTTTACTCGTTCGGGATTT 1556 |||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||||| Sbjct 1490 CTGAGTACATGAGGACTTATCAGCTCACTGCCAAAAGCGATGTTTACTCATTCGGGATTT 1549 Query 1557 TGCTTGTGGAGATACTCACAGGCCGTCGTCCAGTGGAGGCCAAGCGACTTCCTGATGAGA 1616 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1550 TGCTTGTGGAGATACTCACAGGCCGTCGTCCAGTGGAGGCCAAGCGACCTCATGATGAGA 1609 Query 1617 GGATTACGGTCCGATGGGCATTCGACAAGTACAATGAAGGGCGAGTTTTTGAACTAGTGG 1676 ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1610 GGATTACAGTTCGATGGGCATTCGACAAGTACAATGAAGGGAGAGTTTTTGAACTAGTGG 1669 Query 1677 ATCCTAACGCGAGGGAACGAGTAGATGAGAAGATACTAAGGAAGATGTTTAGTTTGGCAT 1736 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1670 ATCCAAACGCGAGGGAACGAGTAGATGAGAAGATACTAAGAAAGATGTTTAGTTTGGCAT 1729 Query 1737 TTCAATGTGCTGCTCCTACTAAAAAAGAGCGGCCTGACATGGAAGCTGTTGGGAAGCAGC 1796 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 1730 TTCAATGTGCTGCTCCTACCAAAAAAGAGCGGCCGGACATGGAAGCTGTTGGGAAGCAGC 1789 Query 1797 TTTGGGCTATAAGATCAAGTTATCTCAGGCGGTCAATGGAATAAGACAAG-TGTTCACAC 1855 |||||||||||||||||||||||||||||||||||||||||||| |||| || | | | Sbjct 1790 TTTGGGCTATAAGATCAAGTTATCTCAGGCGGTCAATGGAATAAAACAAAATGCT-ATA- 1847 Query 1856 GTTACAACCACCAAAATGCTATAGTCTCTCTGTTGTTAGATAATATCACCTCTTTTACAT 1915 || | | | || | | || | | | | ||| | | ||||||||||||| Sbjct 1848 GT--CT-CT-C-----TG-T-T-GT-TA---GAT---A-ATA-T-T-ACCTCTTTTACAT 1884 Query 1916 TTTGCTATCCAACCACTTCTTCTTCAGATTTGAAATGAGATGTCTTATTCAT 1967 |||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 1885 TTTGCTATGAAACCACTTCTTCGTCAGATTTGAAATGAGATGTCTTATTCAT 1936 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73971255790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5