BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G11810.1
Length=1611
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931035 jgi|Araly1|931035|scaffold_303492.1 2196 0.0
Ahg488950 jgi|Araly1|488950|fgenesh2_kg.6__2084__AT5G20410.1 597 8e-170
> Ahg931035 jgi|Araly1|931035|scaffold_303492.1
Length=1441
Score = 2196 bits (1189), Expect = 0.0
Identities = 1359/1442 (94%), Gaps = 8/1442 (1%)
Strand=Plus/Plus
Query 47 TTCTTCAACACCAAATAGTCATGATGAAAGTGGTGTCACCTCGTACACGGTCGGATTCAA 106
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 TTCTTCAACACCAAATAGTCATGATGAAAGTGGTGTCACCTCGTACAAGGTCGGATTCAA 60
Query 107 TCACTGAGAAGGTGTTTCGACGAGTCTATAGCAATTTTAACATCTCAACAGTAGAAGATG 166
|||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||
Sbjct 61 TCACTGAGAAGGTGTTCCGACGAGTCTATAGCAATTTTAATATCTCAACGGTCGAAGATG 120
Query 167 AGTATATCCATCGTCAGAGATCAAGTGATTATGAGAAGGAGAGTCGTCTAAGGAAGAGAG 226
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 AGTATATCCATCGTCAGAGATCAAGTGATTACGAGAAGGAGAGTCGTCTAAGGAAGAGAG 180
Query 227 GGTTAGAAGACAAAGAAGAAGTTATGGAGATGGAGCAGATGGGAGCAGAGAGGATCAAAA 286
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTAGAAGAAAAAGAAGAAGTTATGGAGATGGAGCAGATGGGAGCAGAGAGGATCAAAA 240
Query 287 CTGTTCTTATTCTCATGAGTGATACCGGCGGTGGCCACCGTGCTTCAGCCGAGGCCATCC 346
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 241 CTGTTCTTATTCTCATGAGTGACACCGGCGGCGGCCACCGTGCTTCCGCCGAGGCCATCC 300
Query 347 GCGACGCTTTCAAGATCGAATTCGGAGATGACTATCGGATAATCATAAAAGATGTTTGGA 406
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GTGACGCTTTCAAGATCGAATTCGGAGATGACTATCGGATAATCATAAAAGATGTATGGA 360
Query 407 AAGAATACACTGGATGGCCATTGAACGACATGGAGAGACAGTACAAGTTCATGGTGAAAC 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AAGAATACACTGGATGGCCATTGAACGACATGGAGAGACAGTACAAGTTCATGGTAAAAC 420
Query 467 ATGTTGGTCTTTGGTCTGTTGCGTTTCATGGTACTTCTCCCAAATGGATCCACAAAAGCT 526
|||||||||||||||| || |||||||||||||| |||||||||||||| |||||||| |
Sbjct 421 ATGTTGGTCTTTGGTCAGTCGCGTTTCATGGTACCTCTCCCAAATGGATACACAAAAGTT 480
Query 527 ATCTAAGTGCTCTTGCCGCTTATTATGCCAAAGAAATAGAGGCCGGTTTAATGGAGTACA 586
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 ATCTAAGTGCTCTCGCCGCTTATTATGCCAAAGAAATAGAGGCTGGTTTAATGGAGTACA 540
Query 587 AACCGGACATTATTATTAGCGTGCATCCTCTGATGCAACACATACCATTGTGGGTAATGA 646
|||| || || ||| ||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 541 AACCAGATATCATTGTTAGCGTACACCCTTTGATGCAACACATACCATTGTGGGTAATGA 600
Query 647 AATGGCAAGGACTTCACAAGAAAGTTATTTTCGTTACGGTCATCACTGATCTAAACACTT 706
|||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||||
Sbjct 601 AATGGCAAGGACTTCATAAGAAAGTCATTTTCGTGACGGTCATAACTGATCTAAATACTT 660
Query 707 GCCACCGTACATGGTTCCATCATGGAGTCAGCAGATGTTATTGTCCGTCCAAAGAGGTTG 766
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 GCCACCGTACATGGTTCCATCATGGAGTCAGCAGATGTTATTGTCCGTCGAAAGAGGTTG 720
Query 767 CAAAGAGAGCATTAGTAGACGGCCTTGATGACTCTCAAATCCGTGTCTTTGGCTTACCTG 826
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 721 CAAAGAGAGCATTAGTAGACGGCCTTGATGACTCTCAAATTCGTGTCTTTGGCTTACCCG 780
Query 827 TCCGCCCATCTTTCCCTCGCACTATTCTCAACAAGAATGAACTAAGGA-AGGAACTTGAA 885
||||||||||||||||||| || ||| || ||||| |||||||||||| || | ||||||
Sbjct 781 TCCGCCCATCTTTCCCTCGTACAATTATCTACAAGGATGAACTAAGGAGAG-AGCTTGAA 839
Query 886 ATAGACTTAAATTTACCTGCGGTTCTATTAATGGGAGGGGGTGAAGGAATGGGTCCGGTT 945
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 ATAGACTTAAATTTACCTGCGGTTCTATTAATGGGAGGCGGTGAAGGAATGGGTCCGGTT 899
Query 946 CAAAAAACAGCTCTAGCCCTTGGAGATTCTTTATACAACTCTAAAGAAAGTAATCCAATA 1005
|||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 900 CAAAAAACTGCTCTAGCCCTTGGAGATGCTTTATACAACTCTAAAGAAAGAAATCCAATA 959
Query 1006 GGACAATTGATTGTCATATGCGGCCGGAACAAAGTCCTTGCTTCTA-CATTAGCATCTCA 1064
|||||||||||||||||||||||||||||||||||||||||||| | |||||| || ||
Sbjct 960 GGACAATTGATTGTCATATGCGGCCGGAACAAAGTCCTTGCTTC-AGCATTAGGGTCCCA 1018
Query 1065 TGAATGGAAGATTCCGGTCAAGGTTCGAGGGTTTGAAACACAAATGGAAAAATGGATGGG 1124
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1019 TGAATGGAAGATTCCAGTCAAGGTTCGTGGGTTTGAAACACAAATGGAAAAATGGATGGG 1078
Query 1125 AGCTTGTGATTGTATCATCACTAAGGCTGGTCCGGGTACGATTGCGGAAGCACTGATTTG 1184
||||||||||||||||||||| ||||| ||||| ||||||||||| |||||| |||||||
Sbjct 1079 AGCTTGTGATTGTATCATCACAAAGGCCGGTCCAGGTACGATTGCAGAAGCATTGATTTG 1138
Query 1185 CGGCCTCCCAATTATCCTCAATGACTATATTCCTGGACAGGAAAAAGGCAACGTGCCGTA 1244
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1139 TGGTCTCCCAATTATCCTCAATGACTATATTCCTGGACAGGAAAAAGGCAATGTGCCTTA 1198
Query 1245 TGTTGTGGACAATGGGGCTGGAGTTTTCACCCGAAGTCCCAAAGAAACTGCGAAAATCGT 1304
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1199 TGTTGTGGACAATGGAGCTGGAGTTTTCACCCGAAGTCCCAAAGAAACTGCGAAAATTGT 1258
Query 1305 GGCGGATTGGTTTAGCAACAATAAAGAGGAATTAAAGAAAATGTCAGAGAATGCTCTAAA 1364
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1259 GGCTAATTGGTTTAGCAACAATAAAGAGGAACTAAAGAAAATGTCAGAGAATGCTCTAAA 1318
Query 1365 GTTGTCGCAACCTGAAGCCGTGTTCGACATTGTGAAGGATATCCATCATCTATCCCAACA 1424
|||| | |||||||| |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1319 GTTGGCCCAACCTGAGGCCGTGTTCGACATCGTGAAAGATATCCATCATCTATCCCAACA 1378
Query 1425 ACAACAAC---GTATTCCACTTTTTAATGAATTTTCCTATTGAAGTGTTGTTTGTTTAGA 1481
|||||||| ||||||||||||||||||| ||||| |||||| || || |||||| |||
Sbjct 1379 ACAACAACAACGTATTCCACTTTTTAATGATTTTTCGTATTGACGTCTTCTTTGTT-AGA 1437
Query 1482 CT 1483
||
Sbjct 1438 CT 1439
> Ahg488950 jgi|Araly1|488950|fgenesh2_kg.6__2084__AT5G20410.1
Length=1772
Score = 597 bits (323), Expect = 8e-170
Identities = 899/1170 (77%), Gaps = 68/1170 (6%)
Strand=Plus/Plus
Query 262 CAGATGGGAGCAGAGAGGATC-AA-AACTGTTCTT-ATTCTCATGAGTGATACCGGCGGT 318
||||| || || ||||||| | || ||| | |||| || |||||||| || ||||| |||
Sbjct 378 CAGATCGGTGCTGAGAGGA-CAAAGAAC-G-TCTTGATCCTCATGAGCGACACCGGAGGT 434
Query 319 GGCCACCGTGCTTCAGCCGAGGCCATCCGCGACGCTTTCAAGATCGAATTCGGAGATGAC 378
|| ||||||||||| || || ||||| ||||||||||||||||||||||||||||| |
Sbjct 435 GGTCACCGTGCTTCGGCTGAAGCCATTCGCGACGCTTTCAAGATCGAATTCGGAGACAAA 494
Query 379 TATCGGA-TAA-TCATAAAAGATGTTTGGAAAGAATACACTGGATGGCCATTGAACGACA 436
|| | || ||| | | || ||||| ||||| |||||||| || ||||||||||| || |
Sbjct 495 TA-CAGAATAAGTG-TGAAGGATGTGTGGAAGGAATACACAGGGTGGCCATTGAATGATA 552
Query 437 TGGAGAGA-CAGTACAAGTTCATGGTGAAACATGTTG-GTCTTTGGTCTGTTGCGTTTCA 494
|||||||| || || |||||||||||||| |||||| | || ||| ||||| |||||
Sbjct 553 TGGAGAGATCA-TATAAGTTCATGGTGAAGCATGTTCAG-CTATGGAAAGTTGCTTTTCA 610
Query 495 TGGTACTTCTCCCAAATGGATCCACAAAAGCTATCTAAGT-GCTC-TTGCCGCTTATTAT 552
| || |||||||||||||||||| | |||||| | || | ||||||| |||||
Sbjct 611 CAGCACATCTCCCAAATGGATCCACTCTTGTTATCTA-GCAGC-CATTGCCGCCTATTAC 668
Query 553 GCCAAAGAAATAGAGGCCGGTTTAATGGAGTACAAACCGGACATTATTATTAGCGTGCAT 612
|| || ||| ||||||| ||||| |||||||| || ||||| || || ||||| || |||
Sbjct 669 GCTAAGGAAGTAGAGGCGGGTTTGATGGAGTATAAGCCGGAGATAATCATTAGTGTTCAT 728
Query 613 CCTCTGATGCAACACATACCATTGTGGGTAATGAAATGGCAAG-GACTTCACAAGAA-AG 670
||| |||||||||| || ||||||||||| | |||||||||| | || || || || ||
Sbjct 729 CCTTTGATGCAACATATTCCATTGTGGGTTCTCAAATGGCAAGAG-CTACAGAA-AAGAG 786
Query 671 TTAT-TTTCGTTACGGTCATCACTGATCTAAACACTTGCCA-CCGTACATGGTTCCATCA 728
|| | ||| || || ||||| |||||||| |||||||| || || ||| ||||| ||||
Sbjct 787 TTCTCTTT-GTCACCGTCATTACTGATCTCAACACTTGTCATCC-TACTTGGTTTCATCC 844
Query 729 TGGAGTCAGCAGATGTTATTGTCCGTC-CAAAGAGGTTGC-AAAGAGAGCATTAGTA-GA 785
|| || | || || ||||||||||| ||| || || || ||| || || || || ||
Sbjct 845 GGGGGTGAATAGGTGCTATTGTCCGTCTCAA-GAAGTGGCGAAA-AGGGCGTT-GTTCGA 901
Query 786 CGGCCTTGATGACTCTCAAATCCGTGTCTTTGGCTTACCTGTCCGCCCATCTTTCCCTCG 845
|| || ||||| |||||| ||||||||||||| ||||||||| | |||||||| | ||
Sbjct 902 TGGGCTCGATGAGTCTCAAGTCCGTGTCTTTGGTTTACCTGTCAGGCCATCTTTTGCACG 961
Query 846 CA-CTATTCTCAACAAGAATGAACTAAGGAAGGAACTTGAAATAGACTTAA-AT-TTACC 902
| | || | ||| |||| ||||| ||||| ||||| || || | || || || |
Sbjct 962 -AGCGGTTTTGGTGAAGGATGATCTAAGAAAGGAGCTTGAGATGGA-TCAAGATCTT-CG 1018
Query 903 TGCGGTTCTATTAATGGGAGG-GGGTGAAGGAATGGGTCCGGTTCAAA-AAACAGCTCTA 960
|||||||||| | |||||||| ||| ||||| |||||||| || ||| ||||||| | |
Sbjct 1019 TGCGGTTCTACTGATGGGAGGAGGG-GAAGGTATGGGTCCTGTG-AAAGAAACAGC-CAA 1075
Query 961 -GCCCTTGGAG-A-TTCTTTATACAACTCTAA-AGAA-AGTAATCCAATAGGACAATTGA 1015
|| |||| || | || ||| || | | || |||| || || || || || ||| ||
Sbjct 1076 AGCTCTTG-AGGAATT-TTTGTATGA-TA-AAGAGAACAGGAAGCCTATTGGGCAAATGG 1131
Query 1016 TTGTCATATGCGGCCGGAACAAAGTCCTTG-CTTCTACATTAGCATCTCAT-GAATGGAA 1073
|||| || || || || ||||| | ||| | ||| | |||| | | ||| ||||||||
Sbjct 1132 TTGTTATCTGTGGACGTAACAA-GAAATTGGCATCTGCGTTAGAAGC-CATTGAATGGAA 1189
Query 1074 GATTCCGGTCAAGGTTCGAGGGTTTGAAACACAAATGGAAAAATGGATGGGAGCTTGTGA 1133
|||||| || ||||||||||| || || || || ||||| ||||||||||||||||||||
Sbjct 1190 GATTCCTGTTAAGGTTCGAGGATTCGAGACTCAGATGGAGAAATGGATGGGAGCTTGTGA 1249
Query 1134 TTGTATCATCACTAAGGCTGGTCCGGGTACGATTGCGGAAGCACTGATTTGCGGC-CTCC 1192
|| |||||||| || ||||| ||||| || || || ||| | |||| | | ||||
Sbjct 1250 CTGCATCATCACAAAAGCTGGACCGGGAACAATCGCTGAATCGTTGATCAGAT-CACTCC 1308
Query 1193 CAATTATCCTCAATGACTATATTCCTGGACAGGAAAAAGGCAACGTGCCGTATGTTGTGG 1252
|||| |||||||| || || ||||| |||||||| ||||| || ||||| ||||| ||||
Sbjct 1309 CAATCATCCTCAACGATTACATTCCCGGACAGGAGAAAGGGAATGTGCCATATGTAGTGG 1368
Query 1253 ACAATGGGGCTGGAGTTTTCACCCGAAGTCCCAAAGAAACTGCGAAAATCGT-GGCGGAT 1311
| ||||| || ||||| ||||| ||||||||||||| || || | |||||| || |||
Sbjct 1369 AGAATGGTGCAGGAGTGTTCACAAGAAGTCCCAAAGAGACAGCTAGAATCGTCGG-GGAA 1427
Query 1312 TGGTTTAGCAACAATA-A-AGAGGAATTA-AAGAAAATGTCAGAGAATGCTC-TAAAGTT 1367
|||||||||| ||| | | ||| || | || ||| | ||||| ||||| | |||| |
Sbjct 1428 TGGTTTAGCA-CAA-AGACAGATGAGCTGGAACAAACT-TCAGACAATGCACGTAAACTA 1484
Query 1368 GTCGCAACCTGAAGCCGTGTTCGACATTGT 1397
| | || ||||| || || |||||||||||
Sbjct 1485 G-CTCAGCCTGAGGCAGTCTTCGACATTGT 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60373038325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5