BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G11851.1
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899564 jgi|Araly1|899564|Al_scaffold_0004_214 294 1e-78
Ahg940928 jgi|Araly1|940928|scaffold_601472.1 196 3e-49
> Ahg899564 jgi|Araly1|899564|Al_scaffold_0004_214
Length=1014
Score = 294 bits (159), Expect = 1e-78
Identities = 262/309 (85%), Gaps = 17/309 (6%)
Strand=Plus/Plus
Query 596 CGCCTTACCCCCATGAAGATGGCTTGAAGCCGAGCATCGACAAGCTTGGTAGAC-GGCAA 654
||| |||| |||||||||||||| ||||| |||||||| |||||||| ||||| | ||
Sbjct 308 CGCGTTACGTCCATGAAGATGGCTCGAAGCGGAGCATCGGCAAGCTTGATAGACAAG-AA 366
Query 655 GAAGATATACGTGTTTGGAAGGTACTGGGAATGTTGTTGCTGATTCCTCAAACTGTGTAG 714
|||||||| |||||||||| ||| ||||| | ||| ||||||||||||||||| ||||
Sbjct 367 GAAGATAT-CGTGTTTGGAGGGTGCTGGG-A---TGTCGCTGATTCCTCAAACTGGGTAG 421
Query 715 AGGTTTTTGATAT-GAAACCCGAACTTGGGACTTGTTGTCTGTGTTAACGCCCAAGATGC 773
|||| |||||||| |||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 422 AGGTATTTGATATGGAAACCGGAACTTGGGACTTGTTGTTTGTGTTTACGCCCAAGATGC 481
Query 774 CCCACAAAATCCAAC-ATGATGTGGTGGTACATA-ACGACACGTATGTTCACGCGGTGGA 831
||| ||||||||||| | | ||||| || || |||||| | ||||| ||||||||||
Sbjct 482 CCCTCAAAATCCAACAAAG-TGTGG-CGT---TAGACGACAAGAATGTTTACGCGGTGGA 536
Query 832 TGAGGATGGTCAAATCTTTTTCTTCTCAACAAGTTGTTGTTTCTTTGTGACAACCGGA-T 890
|||||||||||||||||||| ||||||| ||||| |||| | |||||||||| ||| |
Sbjct 537 TGAGGATGGTCAAATCTTTTCCTTCTCACCAAGTAATTGTATGTTTGTGACAAGGGGAAT 596
Query 891 CAAAAGAGT 899
||||||||
Sbjct 597 -AAAAGAGT 604
> Ahg940928 jgi|Araly1|940928|scaffold_601472.1
Length=1153
Score = 196 bits (106), Expect = 3e-49
Identities = 272/348 (78%), Gaps = 28/348 (8%)
Strand=Plus/Plus
Query 378 TATATATGCAGATGCATCAAAATCCAAGCCCATGGTGGTTCGTCCACCACCCCCATGCAA 437
|||||||||| | | ||| | | ||||||||| |||||||||||| ||| |||| |||||
Sbjct 250 TATATATGCACAAGTATCCAGACCCAAGCCCACGGTGGTTCGTCCTCCA-CCCCGTGCAA 308
Query 438 CGTCTGCTCAAACCGGTCCAATCGAGCTTGTGTCCTTTCCTTGAATCAGGATTATGTTTC 497
|||| ||| |||||||| |||| | | || || | | |||||| ||||||
Sbjct 309 CGTCGGCTGAAACCGGT-GAATC---C---AG-CC---CC-GGTAGCAGGATCCTGTTTC 356
Query 498 GTG-AGGTA-GGATTGCGGAATCTACATTATTTGTGGACTCATGAACGGCAAACCCACAT 555
||| | | | || ||| || ||||| | ||| |||||||||||||||||||||||||||
Sbjct 357 GTGCA-G-ACGGCTTGGGGGATCTATACTATCGGTGGACTCATGAACGGCAAACCCACAT 414
Query 556 CGGAAGTC-C-TTTATTCGACTGTATACAA-CACACAA-TGCACCGCCTTACCCCCATGA 611
|||||||| | ||| || || |||| | | ||| ||| || |||| || | |||||||
Sbjct 415 CGGAAGTCACGTTTTTT-GATTGTAC-CGATCAC-CAAGTGTGCCGCGTTGCGCCCATGA 471
Query 612 AGATGGCTTGAAGCCGAGCATCGACAAGCTTGGTAGAC-GGCAAGAAGATATACGTGTTT 670
|| | ||| ||||| |||||||| || ||||| ||||| |||| ||||||||||||||||
Sbjct 472 AGGTAGCTCGAAGCGGAGCATCGGCATGCTTGATAGACAGGCA-GAAGATATACGTGTTT 530
Query 671 GGAAGGTACTGGGA--ATGTTGTTGCTGATTCCTCAAACTGTGTAGAG 716
||| ||| |||||| |||| | ||||||||||| ||||| ||||||
Sbjct 531 GGAGGGTGCTGGGATGATGTCGCCGCTGATTCCTCTAACTGGGTAGAG 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389692116
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5