BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G11890.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931036 jgi|Araly1|931036|scaffold_303493.1 1260 0.0
> Ahg931036 jgi|Araly1|931036|scaffold_303493.1
Length=856
Score = 1260 bits (682), Expect = 0.0
Identities = 793/845 (94%), Gaps = 14/845 (2%)
Strand=Plus/Plus
Query 4 TTGAGAAGAAAACCAACAAAAATCCAACTCAAAATCGAAGACCGTGAAGAGCTTGAACAA 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGAGAAGAAAACCCACAAAAATCCAACTCAAAATCGAAGACCGTGAAGAGCTTGAACAA 60
Query 64 TCCCGCAAATCTCAaccatccaccaccacaaccaccgcaccatcttcctcctccgccgcc 123
||||||||||||||||||||||||||||| | || | |||| | | | | |||||| ||
Sbjct 61 TCCCGCAAATCTCAACCATCCACCACCACCA-CAAC-CACC-GC-T-C-CATCCGCCTCC 114
Query 124 tcctctctccaccacctcATAGACCCAAAACACAAAAACCCTTCCTCCAAATCCGACCGA 183
|||||||||||||||||||||||||||||||| |||||| | || |||||||||||| ||
Sbjct 115 TCCTCTCTCCACCACCTCATAGACCCAAAACAGAAAAACACATCTTCCAAATCCGACAGA 174
Query 184 ATCGGTCTCTCTT-AAA-AC-A---CTCCATGGAAGTCGAAGTCAAGCTCCGTCTCCTAA 237
||||||||||||| ||| || | |||||||||||||||||||||||||||||||||||
Sbjct 175 ATCGGTCTCTCTTGAAACACAATTCCTCCATGGAAGTCGAAGTCAAGCTCCGTCTCCTAA 234
Query 238 CCGCCGCTGCTCATCTCCGTCTCACCACTCTCCTCACTCCATACCACCTCAAAACCCTTC 297
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 235 CCGCCGCTGCTCATCTCCGTCTCACCACTCTCCTCACTCCTTTCCACCTCAAAACCCTTC 294
Query 298 ACCAACGCAACACCTTCTTCGACACACCCAAAAACGACCTCTCTCTCCGCCGCGCCGTCC 357
|||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 295 ACCAACGCAACATCTTCTTCGACACACCCAAGAACGACCTCTCCCTCCGCCGCGCCGTCC 354
Query 358 TCCGTCTCCGCTTCCTTCAAAACGCCGCCGTTTCCGCGGCTTCTCCTTCTCCGCCGCGTT 417
|||| ||||| ||||| ||||||||||||||||| ||| ||||| |||||||||||||||
Sbjct 355 TCCGCCTCCGTTTCCTCCAAAACGCCGCCGTTTCTGCGTCTTCTTCTTCTCCGCCGCGTT 414
Query 418 GTATCGTCTCTCTTAAAGCGAAGCCAACTCTAGCTAATGGGATTAGTCGTGTGGAGGAAG 477
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 415 GTATCGTCTCTCTTAAAGCGAAACCAACGCTAGCTAATGGGATTAGTCGTGTGGAAGAAG 474
Query 478 ATGAAGAGGAGATTGAGTATTGGATTGGTAAAGAATGTGTTGAGT-CACCGGCTAAGCTC 536
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 475 ATGAAGAGGAGATTGAGTATGGGATTGGTAAAGAATGTGTTG-GTTCACCGGCTAAGCTC 533
Query 537 TCAGATATTGGATCTAGGGTTTTGAAAAGGGTTAAAGAGGAATATGGGTTTAATGACTTT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 534 TCAGATATTGGATCTAGGGTTTTGAAAAGGGTTAAAGAGGAATATGGGTTTAAAGACTTT 593
Query 597 TTAGGGTTTGTTTGTTTAGGTGGCTTTGAGAATGTTAGGAATGTTTATGAGTGGAGAGGT 656
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 594 CTGGGGTTTGTTTGTTTAGGTGGGTTTGAGAATGTTAGGAATGTTTATGAGTGGAGAGGT 653
Query 657 GTTAAACTTGAGGTTGATGAGACTAAGTATGATTTTGGGAATTGTTATGAGATTGAATGT 716
|| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 654 GTGCAACTTGAGGTTGATGAGACTAAGTATGATTTTGGGAACTGCTATGAGATTGAATGT 713
Query 717 GAGACAGAGGAACCAGAGCGTGTTAAGACAATGATTGAGGAGTTTCTTACAGAGGAGAAG 776
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 714 GAGACAGAGGAACCTGAGCGTGTTAAGACAATGATTGAGGAGTTTCTTACTGAGAACAAG 773
Query 777 ATTGAGTTTTCGAATTCCGACATGACAAAGTTTGCTGTTTTCCGGTCAGGAAAACTTCCT 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 ATTGAGTTTTCGAATTCCGACATGACAAAGTTTGCTGTTTTCCGGTCAGGAAAACTTCCT 833
Query 837 TGACA 841
|||||
Sbjct 834 TGACA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5