BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G11910.1

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg931037 jgi|Araly1|931037|scaffold_303494.1                        815    0.0  


> Ahg931037 jgi|Araly1|931037|scaffold_303494.1
Length=548

 Score =  815 bits (441),  Expect = 0.0
 Identities = 517/553 (93%), Gaps = 8/553 (1%)
 Strand=Plus/Plus

Query  127  GTGTTCAATTTTGAGTAGATATGGAAGTGGTTGCTGTTGGGTCAATGAAGACGCAGAGAC  186
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    GTGTTCAATTTTGAGTAGATATGGAAGTGGTTGCTGTTGGGTCAATGGAGACGCAGAGAC  60

Query  187  AGGAGACATGGGCTTGCTCTGTCACTGAGTCTTTTCTCCTCCTCGTCGGAAAGAATCTGG  246
            ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct  61   AGGAGACATGGGCTTGCTCTGTCACTGAGTCGTTTCTCATCCTCGTCGGAAAGAATCTGG  120

Query  247  CTTGTCTTCTCCTTGTGGCAGAATCATTACTGATAGGTTTGGTTGCTGTTGACCAGAGGT  306
            |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct  121  CTTGTCTTCTCCTTGTGGCAGAATCATTGCTGATAGGGTTGATTGCTGTTGACCAGAGGT  180

Query  307  TGTCTGTCAAGGAGGGTTACAAAAGAGGAAGCCGTATTGAGGAAAACAAAGATGCTAGtg  366
            ||||| | |||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct  181  TGTCTCTGAAGGAGGGTTACAAAAGAGGAAGCCGTGCTGAGGAAAACAAAGATGCTAGTG  240

Query  367  acagtgacgatgacgac---gatgatgaagacgctgatgaggacgacgatgatgaggatg  423
            ||| |||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||
Sbjct  241  ACACTGACGATGACGACGATGATGATGAAGACGCTGATGAGGATGACGACGATGAGGATG  300

Query  424  atgctaatgatgaagatTTCTCAGGGGGTGAAGGGGATGAAGGAGAAGAAGAAGCTGATC  483
            ||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||
Sbjct  301  ATGCTAATGATGAAGATTTCTCAGGGGGTGAAGGGGATGAAGG-G--GAAGAAGCTGATC  357

Query  484  CAGAGGATGATCCTGTGACCAATGGTggaggaggaagcgatgatgaagatgacgatgatg  543
            ||||||||||||| ||| ||||||||||||||||||||||||| || |||| ||||||||
Sbjct  358  CAGAGGATGATCCAGTGGCCAATGGTGGAGGAGGAAGCGATGACGATGATGGCGATGATG  417

Query  544  aggagggtgataatgatgacgaggatgaggacaatgaagatgaggaagaagacgatgatg  603
            |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct  418  AGGAGGGTGATAATGATGACGATGATGAGGACAATGAGGATGAGGAAGAAGACGAGGATG  477

Query  604  aggaagatgatgatgatgttcgccagccgccatcgaagaagagaaaatgatgatgatgaG  663
            ||||||||||||||||||||||||||||||| || ||||| ||||||| |  || |||||
Sbjct  478  AGGAAGATGATGATGATGTTCGCCAGCCGCCCTCTAAGAAAAGAAAATAA--ATCATGAG  535

Query  664  TTCATGAGTGTTT  676
            || |||| |||||
Sbjct  536  TTAATGAATGTTT  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30727071102


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5