BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12190.1
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg475495 jgi|Araly1|475495|fgenesh2_kg.2__625__AT1G64940.1 2230 0.0
Ahg925338 jgi|Araly1|925338|scaffold_200899.1 1358 0.0
> Ahg475495 jgi|Araly1|475495|fgenesh2_kg.2__625__AT1G64940.1
Length=1542
Score = 2230 bits (1207), Expect = 0.0
Identities = 1433/1544 (93%), Gaps = 7/1544 (0%)
Strand=Plus/Plus
Query 1 ATGGAGATATGGTTACTTATCTTGGGctctctcttcctctctctccttctcaatttactc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 ATGGAGATATGGTTACTTATCTTGGGCTCTCTCTTCCTCTCTCTCCTTCTCAATCTCCTC 60
Query 61 ctctttcgccgccgtga---ctcctcctctcttccGTTACCACCTGACCCTAACTTCTTC 117
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTCTTTCGCCGCCGTGACTCCTCCTCCTCTCTTCCGTTACCTCCTGACCCTAACTTCTTC 120
Query 118 CCTTTCCTTGGAACCCTCCAATGGCTCCGGCAAGGCTTAGGTGGACTCAACAACTATCTC 177
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 CCTTTCCTTGGAACCCTCCAATGGCTCCGGCAAGGTTTAGGTGGTCTCAACAACTATCTC 180
Query 178 CGCTCCGTCCACCACCGTCTCGGTCCCATCATCACCCTTCGCATCACTTCCCGCCCCGCT 237
||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 181 CGCACCGTCCACCACCGTCTCGGTCCCATCATCACCCTCCGTATCACTTCCCGCCCCGCA 240
Query 238 ATCTTCGTCGCCGATCGTTCTCTTGCTCACCAGGCTCTCGTTTTGAACGGTGCCGTTTTC 297
|||||||| ||||||||||| |||||| | |||||||| || ||||||||||||||||||
Sbjct 241 ATCTTCGTGGCCGATCGTTCCCTTGCTTATCAGGCTCTAGTCTTGAACGGTGCCGTTTTC 300
Query 298 GCTGATCGTCCACCGGCTGCTCCGATCAGTAAGATTATTTCGAGTAACCAACATAACATC 357
|| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 GCCGATCGTCCACCGGCGGCTCCGATCAGTAAGATTGTTTCGAGTAACCAACATAACATC 360
Query 358 AGCTCTAGTTTATATGGAGCCACGTGGCGTCTTCTTCGCCGGAATCTCACTTCTGAGATT 417
|||||| | ||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 361 AGCTCTTCATCATACGGAGCTACGTGGCGGCTTCTTCGCCGGAATCTCACTTCTGAGATT 420
Query 418 CTTCACCCCTCGCGCGTGAGATCTTACTCTCACGCGCGGCGTTGGGTTCTTGAGATTCTT 477
|||||||| || || |||| |||||| |||||||||||| |||||||||||| ||| ||
Sbjct 421 CTTCACCCGTCACGGGTGAAATCTTATTCTCACGCGCGGGGTTGGGTTCTTGGGATACTC 480
Query 478 TTTGATCGATTTGGTAA-AAGCAGAGGTGAAGAACCGATTGTTGTTGTTGATCATCTTCA 536
|||||||| ||| |||| || | | |||||||||||||||||||| ||||||||||||||
Sbjct 481 TTTGATCGTTTTCGTAAGAA-CGGCGGTGAAGAACCGATTGTTGTGGTTGATCATCTTCA 539
Query 537 CTATGCAATGTTTGCGCTTCTTGTTCTCATGTGTTTTGGAGATAAGCTTGACGAGAAACA 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 540 CTATGCAATGTTTGCGCTTCTTGTTCTCATGTGTTTTGGAGATAAGCTTGATGAGAAGCA 599
Query 597 AATCAAACAGGTGGAATATGTTCAGAGACGACAGCTTCTTGGCTTTTCCAGATTCAATAT 656
||||||||||||| |||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 600 AATCAAACAGGTGCAATATGTTCAGAGACGACAGCTTCTTCGCTTTTCCAGATTTAACAT 659
Query 657 TCTCAATCTCTGGCCTAAGTTTACTAAATTGATTTTGCGAAAGAGATGGGAAGAGTTTTT 716
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTCAATCTTTGGCCTAAGTTTACTAAATTGATTTTGCGAAAGAGATGGGAAGAGTTTTT 719
Query 717 CCAGATGCGGAGAGAGCAGCATGACGTTTTGCTTCCGTTGATTCGTGCTCGgagaaagat 776
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 720 CCAGATGCGGAGAGAGCAGCATGATGTTTTGCTTCCGCTGATTCGTGCTCGGAGAAAGAT 779
Query 777 tgttgaagagagaaagaatagatcatcagaggaagaagaagaCAACAAAGTGTATGTACA 836
||| |||||||| |||||||||||||| ||||| | ||||| |||||||| |||||||||
Sbjct 780 TGTCGAAGAGAGGAAGAATAGATCATCGGAGGAGGCAGAAGTCAACAAAGAGTATGTACA 839
Query 837 ATCATACGTTGATACTCTGCTTGAGCTGGAGCTTCCAGATGAGAAGAGGAAGCTGAACGA 896
|||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||
Sbjct 840 ATCATACGTTGATACTTTGCTCGATCTGGAGCTTCCAGATGAGAAGAGGAAGCTGACCGA 899
Query 897 AGATGAGATTGTTAGTTTGTGTTCGGAGTTTCTCAACGGTGGGACTGATACAACGGCCAC 956
||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 900 GGATGAGATTGTGAGTTTATGCTCTGAGTTTCTCAACGGTGGGACTGATACAACGGCCAC 959
Query 957 CGCGTTGCAATGGATCATGGCGAAC-TTGGTGAAAAACCCGGAGATTCAGAAGAGGTTAT 1015
||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||
Sbjct 960 CGCGTTGCAATGGATCATGGCGAACCTTG-TGAAAAACCCGGAGATTCAGAGGAGGTTAT 1018
Query 1016 ACGAGGAGATCAAAAGCGTAGTTGGGGAAGAAGCAAAGGAAGTAGAGGAAGAAGACGCGC 1075
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 ACGAGGAGATCAAAAGCGTAGTTGGGGAAGAAGCAAAGGAAGTGGAGGAAGAAGACGCGC 1078
Query 1076 AAAAGATGCCGTATCTAAAGGCAGTGGTGATGGAGGGTCTCCGGAGACATCCTCCGGGAC 1135
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1079 AAAAGATGCCGTATCTAAAGGCAGTGGTGATGGAGGGTCTTCGGAGGCATCCTCCGGGAC 1138
Query 1136 ATTTTGTACTCCCGCACAGTGTAACTGAGGACACTGTGTTGGGAGGATACAAAGTCCCGA 1195
| ||||| |||||||| ||||| || ||||||||||| ||||||||||||||||| ||||
Sbjct 1139 ACTTTGTGCTCCCGCATAGTGTCACGGAGGACACTGTATTGGGAGGATACAAAGTACCGA 1198
Query 1196 AGAAGGGAACAATTAATTTCATGGTGGCAGAGATTGGGAGGGATCCAATGGTGTGGGAGG 1255
||||||| || ||||| ||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1199 AGAAGGGGACGATTAACTTCATGGTGGCAGAGATAGGGAGGGATCCAAAGGTGTGGGAGG 1258
Query 1256 AACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAAGCGGTGGACATAACCG 1315
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1259 AACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAACCGGTGGACATAACAG 1318
Query 1316 GAAGCAGAGGGATAAAGATGATGCCGTTCGGGGCGGGTAGAAGGATTTGTCCAGGGATTG 1375
|||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||||
Sbjct 1319 GAAGTAGAGGGATAAAAATGATGCCGTTCGGAGCGGGAAGAAGGATATGTCCGGGGATTG 1378
Query 1376 GGCTAGCGATGCTGCATCTTGAGTACTATGTGGCGAATATGGTGAGGGAGTTTGAGTGGA 1435
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGCTAGCGATGCTGCATCTCGAGTACTATGTGGCGAATATGGTGAGGGAGTTTGAGTGGA 1438
Query 1436 AAGAGGTCCAAGGTCATGAAGTGGACTTGACGGAGAAGTTTGAGTTTACCGTAGTCATGA 1495
| |||||| ||||||||||||| |||||||| |||||| | ||||| ||| |||||||
Sbjct 1439 AGGAGGTCGAAGGTCATGAAGTTGACTTGACTGAGAAGCTCGAGTTCACCACCGTCATGA 1498
Query 1496 AGCATTCGCTTAAGGCTCTTGCTGTTCTTAGGAGAAGTCACTAG 1539
| ||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 1499 AACATCCTCTTAAGGCTCTTGCTGTTCCTAGGAGAAGTCACTAG 1542
> Ahg925338 jgi|Araly1|925338|scaffold_200899.1
Length=1564
Score = 1358 bits (735), Expect = 0.0
Identities = 1297/1564 (83%), Gaps = 55/1564 (4%)
Strand=Plus/Plus
Query 1 ATGGAGATATGGTTACTT-ATCTTGGGctctctcttcc-tctctctccttctcaatttac 58
||||||||||||||| || ||||||| ||||||| ||| | |||||||||||| | | |
Sbjct 21 ATGGAGATATGGTTA-TTCATCTTGGCCTCTCTC-TCCGTATCTCTCCTTCTCCA--T-C 75
Query 59 tcctctttcgccgccgtgactcctcctctcttccGTTACCACCTGACCCTAACTTCTTCC 118
||||| | ||||||||| |||||||||| | |||| |||| |||||||| |||||||| |
Sbjct 76 TCCTCCTCCGCCGCCGTAACTCCTCCTCCCCTCCGCTACCTCCTGACCCCAACTTCTTAC 135
Query 119 CTTTCCTTGGAACCCTCCAATGGCTCCGGCAAGGCTTAGGTGGACTCAACAAC-TATCTC 177
||||||||||||||||||| ||||||||| ||||||||||||| ||| | | | ||||||
Sbjct 136 CTTTCCTTGGAACCCTCCAGTGGCTCCGGGAAGGCTTAGGTGGCCTCGA-ATCTTATCTC 194
Query 178 CGCTCCGTCCACCACCGTCTCGGTCCCATCATCACCCTTCGCATCACTTCCCGCCCCGCT 237
|||||||||||||||||||| || |||||| | ||||| ||||||||||| ||||||||
Sbjct 195 CGCTCCGTCCACCACCGTCTAGGCCCCATCGTTACCCTCCGCATCACTTCACGCCCCGCC 254
Query 238 ATCTTCGTCGCCGATCGTTCTCTTGCTCACCAGGCTCTCGTTTTGAACGGTGCCGT-TTT 296
|| || || ||||| ||||| ||| ||||| |||||||||| ||||||| ||||| | |
Sbjct 255 ATATTTGTTGCCGACCGTTCCCTTACTCACGAGGCTCTCGTCCTGAACGGCGCCGTCTAT 314
Query 297 CGCTGATCGTCCACCGGCTGCTCCG-A-TCAGTAAGATTATTTCGAGTAACCAACATAAC 354
|| || |||||||| | | | | | |||| |||| || || | || |||| |||
Sbjct 315 -GCAGACCGTCCACCACCAGAT--GTAGTCAGCAAGA-TAGTT---G--ACAAACACAAC 365
Query 355 ATCAGCTCTA-GTTTATATGGAGCCACGTGGCGTCTTCTTCGCCGGAATC-TCACTTCTG 412
|||||||| | | | ||| ||||| |||||||| ||||| || | ||| | |||| ||||
Sbjct 366 ATCAGCTC-AGGGTCATACGGAGCAACGTGGCGGCTTCTCCGTC-GAAACATCACCTCTG 423
Query 413 AGATTCTTCACCCCTCGCGCGTGAGATCTTACTCTCACGCGCGGCGTTGGGTTCTTGAGA 472
||||||||||||||||||| ||| |||||||||| ||||| || | |||||||||||||
Sbjct 424 AGATTCTTCACCCCTCGCGTGTGCGATCTTACTCCCACGCCCGTCACTGGGTTCTTGAGA 483
Query 473 TTCTTTTTGATCGATTTGGTAA-AAGCAGAGGTGAAGAACCGATTGTTGTTGTTGATCAT 531
| || ||||| || || |||| | | |||||||||||||||| || | | | |||
Sbjct 484 TCCTCTTTGACCGGTTCCGTAACCA-CGGAGGTGAAGAACCGATCGTCCTCATCCACCAT 542
Query 532 CTTCACTATGCAATGTTTGCGCTTCTTGTTCTCATGTGTTTTGGAGATAAGCTTGACGAG 591
|| |||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 543 CTCCACTATGCAATGTTTGCGCTTCTTGTCCTCATGTGTTTTGGGGACAAGCTCGACGAG 602
Query 592 AAACAAATCAAACAGGTGGAATAT-GTTCAGAGACGACAGCTTCTTGGCTTTTCCAGATT 650
|| ||||||||||| ||||||| | ||||||||| |||||| || |||| ||||||||
Sbjct 603 AAGCAAATCAAACAAGTGGAAT-TCATTCAGAGACTACAGCTCCTCAGCTTGTCCAGATT 661
Query 651 CAATATTC-TCAATC-TCTGGCCTAAGTTTACTAAATTGATTTTGCGAAAGAGATGGGAA 708
|| | || |||| | | ||||||||||| || ||||||||| | |||||||||||| ||
Sbjct 662 TAACA-TCTTCAA-CATTTGGCCTAAGTTCACCAAATTGATTCTACGAAAGAGATGGCAA 719
Query 709 GAGTTTTTCCAGATGCGGAGAGAGCAGCATGACGTTTTGCTTCCGTTGATTCGTGCTCGg 768
|| ||| ||||||| |||||| |||||| ||||||||||||||| |||||||||| |||
Sbjct 720 GAATTTCTCCAGATTCGGAGACAGCAGCGGGACGTTTTGCTTCCGCTGATTCGTGCCCGG 779
Query 769 a-gaaagattgttgaagagagaaagaatagatcatcagaggaagaagaagaCAACAAAGT 827
| | ||||| || |||||||| | | ||||| | || | ||||||||||| ||||
Sbjct 780 ATG-AAGATCGTGGAAGAGAG---GCAGAGATC--C-GA-G--GAAGAAGACAAAAAAGA 829
Query 828 GTATGTACAATCATACGTTGATACTCTGCTTGAGCTGGAGCTTCCAGATGAGAAGAGGAA 887
||||| |||||||| ||||||||||| || || || ||||||||||| |||||||||||
Sbjct 830 CTATGTGCAATCATATGTTGATACTCTTCTCGATCTAGAGCTTCCAGAAGAGAAGAGGAA 889
Query 888 GCTGAACGAAGATGAGATTGTTAGTTTGTGTTCGGAGTTTCTCAAC-GGTGGGACTGATA 946
||| ||||| || || || | | ||||| |||||||||||| || | |||||||| |
Sbjct 890 GCTCAACGAGGACGACATCATGAACTTGTGCTCGGAGTTTCTC-ACTGCCGGGACTGACA 948
Query 947 CAACGGCCACCGCGTTGCAATGGATCATGGCGAACTTGGTGAAAAACCCGGAGATTCAGA 1006
|||||||||||||| |||||||||||||||| ||| | |||||| | || || || |||
Sbjct 949 CAACGGCCACCGCGCTGCAATGGATCATGGCCAACCTCGTGAAATATCCAGAAATACAGG 1008
Query 1007 AGAGGTTATACGAGGAGATCAAAAGCGTAGTTGGGGAAGAAGCAAAGGAAGTAGAGGAAG 1066
|||| || |||||||||||| ||||||||| ||||||||||||||||| || |||||||
Sbjct 1009 AGAGACTACACGAGGAGATCAGAAGCGTAGTGGGGGAAGAAGCAAAGGAGGTGGAGGAAG 1068
Query 1067 AAGACGCGCAAAAGATGCCGTATCTAAAGGCAGTGGTGATGGAGGGTCTCCGGAGACATC 1126
|||| | | | || ||||||||||||||||| |||||| ||||||| || ||| |||| |
Sbjct 1069 AAGATGTGGAGAACATGCCGTATCTAAAGGCTGTGGTGTTGGAGGGACTACGGCGACACC 1128
Query 1127 CTCCGGGACA-TTTTGTACTCCCGCACAGTGTAACTGAGGACACTGTGTTGGGAGGATAC 1185
|||| ||||| |||| | |||||||| ||||| || ||||| ||||| |||||||| |||
Sbjct 1129 CTCCCGGACACTTTT-TGCTCCCGCATAGTGTCACGGAGGATACTGTATTGGGAGGGTAC 1187
Query 1186 AAAGTCCCGAAGAA-GGGAACAATTAATTTCATGGTGGCAGAGATTGGGAGGGATCCAAT 1244
|| || |||||||| ||| || || || |||||||| ||||| || ||||||||||||
Sbjct 1188 AAGGTACCGAAGAATGGG-ACGATCAACTTCATGGTTGCAGAAATAGGGAGGGATCCAGC 1246
Query 1245 GGTGTGGGAGGAACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGAAGAAGCGGT 1304
|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1247 GGAGTGGGAAGAACCAATGGCGTTTAAGCCAGAGAGGTTTATGGGAGAAGACGAAGCGGT 1306
Query 1305 GGACATAACCGGAAGCAGAGGGATAAAGATGATGCCGTTCGGGGCGGGTAGAAGGATTTG 1364
|||| |||||||||| |||||||||||||||||||||||||| || || || ||||| ||
Sbjct 1307 GGACCTAACCGGAAGTAGAGGGATAAAGATGATGCCGTTCGGAGCAGGAAGGAGGATATG 1366
Query 1365 TCCAGGG-ATTGGGCTAGCGATGCTGCATCTTGAGTACTATGTGGCGAATATGGTGAGGG 1423
||| ||| || |||||||| || ||||||| |||||||| | || |||||||| || |
Sbjct 1367 TCC-GGGTATAGGGCTAGCTCTGTTGCATCTCGAGTACTACATTGCCAATATGGTCAGAG 1425
Query 1424 AGTTTGAGTGGAAAGAGGTCCAAGGTCATGAAGTGGACTTGACGGAGAAGTTTGAGTTTA 1483
|||| | |||||||||||| ||||| | ||||| ||||||||||||||| |||||||||
Sbjct 1426 AGTTCCAATGGAAAGAGGTCGAAGGTTACGAAGTTGACTTGACGGAGAAGCTTGAGTTTA 1485
Query 1484 CCGTAGTCATGAAGCATTCGCTTAAGGCTCTTGCTGTTCTTAGGAGAAGTCA---CTAGT 1540
|||| |||||||||||| ||||||||||| ||||||||| |||||||||||| |||||
Sbjct 1486 CCGTCGTCATGAAGCATCCGCTTAAGGCTTTTGCTGTTCATAGGAGAAGTCAGGACTAGT 1545
Query 1541 CGTC 1544
||||
Sbjct 1546 CGTC 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63915431110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5