BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12400.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931043 jgi|Araly1|931043|scaffold_303500.1 2543 0.0
> Ahg931043 jgi|Araly1|931043|scaffold_303500.1
Length=1663
Score = 2543 bits (1377), Expect = 0.0
Identities = 1573/1669 (94%), Gaps = 8/1669 (0%)
Strand=Plus/Plus
Query 162 aaaaaaaaaGAACCAGACATAATGTTGTGTTTCAGATCTCAAAGAGTGTTTATACTTGTG 221
||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAAA-AACCAGACATTATGTTGTGTTCCAGATCTCAAAGAGTGTTTATACTTGTG 59
Query 222 TCTCTGTGTTTACTCTCTTCGTTTCTTGTGGTCGTCACTGGAACAACATCGATTACTGGG 281
||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 60 TCTTTGTGTTTACTCTCTTCGTTTCTTCTGGTCGTCACTGGAACAACATCGAATACTGGG 119
Query 282 GTTGGTAACGAAGAAGAAAGAGGTGTAGAAGAAGAATGGAGAACAAGTGTAATAGAAAGA 341
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 120 GTTGGTAACGAAGAAGAAGGAGGTGT---AGAAGAATGGAGAACAAGTGTAATAGAAAGA 176
Query 342 GTAATTGCAGAGGAAAGTGGAGAGAACTCATCTCTGATTTTAGCTGCAAAGAGAA-CAAG 400
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 177 GTAATTGCAGAGGAAAGTGGAGAAAACTCATCTCTGATTTTGGCTGCAAAGAGAACCAA- 235
Query 401 AAGAAAAGATCCTGCTGATAATTTCAAACTCTACACTGGTGGATGGAATATAAGCAATTC 460
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 236 AAGAAAAGATCCTAATGATAATTTCAAATTCTACACTGGTGGATGGAATATAAGCAATTC 295
Query 461 CCATTATTTGACTTCTGTTGGTTATACAGCGGCGCCTTTCATTATAATAGCACTAGTCTG 520
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 296 CCATTATTTGACTTCTGTTGGTTATACAGCGGTGCCTTTCATTATAATAGCAGTAGTCTG 355
Query 521 GTTTGTGTTCTTTGGGCTATCATTGTCTCTGATTTGCCTTTGTTATTGCTGCTGTGCCCG 580
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 356 GTTTGTGTTCTTTGGGCTATCCTTGTCTCTGATTTGCCTTTGTTATTGCTGCTGTGCCCG 415
Query 581 TCAATCTTATGGTTATTCCCGGGTTGCTTATGCTCTATCCCTTATCCTCCTCATCTCGTT 640
|||| |||| || |||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 416 TCAACCTTACGGCTATTCCCGCGTTGCTTATGCTCTATCCCTTATCCTCCTCATATCATT 475
Query 641 CACAATCGCAGCAATTATAGGATGTGTTTTTCTTTACACTGGTCAAGGGAAATTTCATGC 700
|||||| |||||||||||||||||| |||| |||||||| |||||||| |||||||||||
Sbjct 476 CACAATTGCAGCAATTATAGGATGTATTTTCCTTTACACGGGTCAAGGAAAATTTCATGC 535
Query 701 TAGCACAACCGATACTTTGGACTATGTCGTGAGTCAAGCGAATCTCACGTCAGAAAACCT 760
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 536 TAGCACAACCGATACTTTGGACTATGTGGTGAGTCAAGCAAATCTCACGTCAGAAAACCT 595
Query 761 CAGGAATGTGTCAGATTATCTTAATGCAGCTAAGAAGGTTGATGTGCAATCCAGCATTTT 820
||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| |
Sbjct 596 CAGGAATGTGTCAGATTATCTCAATGCAGCTAAGAAAGTGGATGTGCAATCCAGCATTCT 655
Query 821 GCCACAAGATGTTCTCTCGAGTATCGACAACATACAGGGAAAGATAAACTCGTCCGCCAC 880
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 656 GCCACAGGATGTTCTCTCGAGCATCGACAACATACAGGGAAAGATTAACTCGTCCGCCAC 715
Query 881 AACTCTTTCTGTGAAAACAATGGAGAACCAAGACAAGATACAAAATGTCTTGGACATCAT 940
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 716 AACTCTTTCTGTGAAAACAATGGAGAACCAAGACAAGATTCAAAATGTCTTGGACAGCAT 775
Query 941 GAGACTTGCTCTCGTCATCATCGCTGCTGTGATGCTTTTCCTTGCGTTTATCGGATTTCT 1000
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 776 GAGACTTGCGCTCGTCATCATCGCTGCTGTGATGCTTTTCCTTGCATTTATTGGATTTCT 835
Query 1001 TCTCTCTATTTTTGGACTGCAATGCCTTGTATATACGTTGGTGATCCTTGGTTGGATTCT 1060
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 836 TCTCTCTATCTTTGGACTGCAGTGCCTTGTGTATACGTTGGTGATCCTTGGTTGGATTCT 895
Query 1061 CGTCACGGTTACCTTCGTCTTATGTGGTGGATTTTTACTTCTACACAACGTTGTAGGGGA 1120
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 896 CGTCACGGTTACCTTCGTCTTGTGTGGTGGATTTCTGCTTCTACACAACGTTGTAGGGGA 955
Query 1121 TACGTGTGTTGCGATGGACCAATGGGTCCAAAACCCAACAGCTCACACGGCTCTAGACGA 1180
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 956 TACGTGTGTTGCGATGGACCAGTGGGTCCAAAACCCAACAGCCCACACGGCTCTAGATGA 1015
Query 1181 TATTCTACCGTGTGTTGATAATGCAACCGCGAGAGAAACATTG-ACTCGGACTAAGCTTG 1239
|||| |||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1016 TATTTTACCATGTGTAGATAATGCAACCGCGAGAGAAACATTGGA-TCGGACTAAGCTTG 1074
Query 1240 TAACATACCAGTTGGTCAATCTTCTTGACAATGCCATTAGCAACATGACCAACAGGAATT 1299
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1075 TGACATACAAGTTGGTCAATCTTCTTGACAATGCCATTAGCAACATGACCAACAGGAACT 1134
Query 1300 TCCCGCCTCAATTCCGGCCTCTTTATTACAACCAGTCAGGTCCACTAATGCCTCTACTCT 1359
||||||||||| |||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1135 TCCCGCCTCAACTCCGCCCTCTTTATTACAACCAGTCAGGTCCACTAATGCCTTTGCTCT 1194
Query 1360 GTAACCCCTTCAACGCTGATCTCTCTGACCGCCAATGCCAGCCTGGTCAGGTCCATCTGA 1419
||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 1195 GTAACCCCTTCAATGCTGATCTCTCTGATCACCAGTGCCAGCCTGGTCAGGTCCATCTGA 1254
Query 1420 ACAATGCAACCGAGGTGTGGAAGAACTTCACTTGCCAAATTGTAACACCGGGAACATGTA 1479
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1255 ACAATGCAACAGAGGTGTGGAAGAACTTCACTTGCCAAATCGTAACACCGGGAACATGCA 1314
Query 1480 GTACACCGGGACGGTTGACACCAAAGCTTTACAGCCAGATGGCTGCAGCGGTTAATGTAA 1539
| |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1315 GCACACAGGGACGGTTGACACCAAAGCTTTACAGTCAGATGGCTGCAGCAGTTAATGTAA 1374
Query 1540 GCTATGGTTTGTACAAGTACGGACCGTTCTTGGCAGACCTACAAGGGTGTGACTTCGTGA 1599
||||||| ||||||||||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 1375 GCTATGGACTGTACAAGTACGGTCCATTCTTGGCAGACCTGCAAGGGTGTGACTTTGTGA 1434
Query 1600 GGTCTACATTCACTGATATAGAGAGGGATCATTGTCCGGGACTTAAGAGATACACACAAT 1659
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1435 GGTCTACATTCACTGCTATAGAGAGGGATCATTGTCCGGGACTGAAGAGATACACACAGT 1494
Query 1660 GGATCTATGTGGGTCTTGTGGTGGTGTCTGCTTCTGTAATGTCATCTTTGGTGTTTTGGG 1719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1495 GGATCTATGTGGGTCTTGTGGTAGTGTCTGCTTCTGTAATGTCATCTTTGGTGTTTTGGG 1554
Query 1720 TTATATATGCGAGAGAGAGGAGGCACCGGGTTTACACAAAAGACTACAACGCTATGCACT 1779
|||||||| || | |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1555 TTATATATTCGCGGGAGAGGAGGCACCGAGTTTACACAAAAGACTACAATGCTATGCACT 1614
Query 1780 CTGAAGATCCACGAAGCAAGGGCCACTGAGAGATTATGTTCTTTTGGAG 1828
||||||||||||||||||||||||| ||||| ||||| ||| |||||||
Sbjct 1615 CTGAAGATCCACGAAGCAAGGGCCAGTGAGATATTATATTCCTTTGGAG 1663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5