BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G12400.1 Length=2009 Score E Sequences producing significant alignments: (Bits) Value Ahg931043 jgi|Araly1|931043|scaffold_303500.1 2543 0.0 > Ahg931043 jgi|Araly1|931043|scaffold_303500.1 Length=1663 Score = 2543 bits (1377), Expect = 0.0 Identities = 1573/1669 (94%), Gaps = 8/1669 (0%) Strand=Plus/Plus Query 162 aaaaaaaaaGAACCAGACATAATGTTGTGTTTCAGATCTCAAAGAGTGTTTATACTTGTG 221 ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 1 AAAAAAAAA-AACCAGACATTATGTTGTGTTCCAGATCTCAAAGAGTGTTTATACTTGTG 59 Query 222 TCTCTGTGTTTACTCTCTTCGTTTCTTGTGGTCGTCACTGGAACAACATCGATTACTGGG 281 ||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 60 TCTTTGTGTTTACTCTCTTCGTTTCTTCTGGTCGTCACTGGAACAACATCGAATACTGGG 119 Query 282 GTTGGTAACGAAGAAGAAAGAGGTGTAGAAGAAGAATGGAGAACAAGTGTAATAGAAAGA 341 |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 120 GTTGGTAACGAAGAAGAAGGAGGTGT---AGAAGAATGGAGAACAAGTGTAATAGAAAGA 176 Query 342 GTAATTGCAGAGGAAAGTGGAGAGAACTCATCTCTGATTTTAGCTGCAAAGAGAA-CAAG 400 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| Sbjct 177 GTAATTGCAGAGGAAAGTGGAGAAAACTCATCTCTGATTTTGGCTGCAAAGAGAACCAA- 235 Query 401 AAGAAAAGATCCTGCTGATAATTTCAAACTCTACACTGGTGGATGGAATATAAGCAATTC 460 ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 236 AAGAAAAGATCCTAATGATAATTTCAAATTCTACACTGGTGGATGGAATATAAGCAATTC 295 Query 461 CCATTATTTGACTTCTGTTGGTTATACAGCGGCGCCTTTCATTATAATAGCACTAGTCTG 520 |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 296 CCATTATTTGACTTCTGTTGGTTATACAGCGGTGCCTTTCATTATAATAGCAGTAGTCTG 355 Query 521 GTTTGTGTTCTTTGGGCTATCATTGTCTCTGATTTGCCTTTGTTATTGCTGCTGTGCCCG 580 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 356 GTTTGTGTTCTTTGGGCTATCCTTGTCTCTGATTTGCCTTTGTTATTGCTGCTGTGCCCG 415 Query 581 TCAATCTTATGGTTATTCCCGGGTTGCTTATGCTCTATCCCTTATCCTCCTCATCTCGTT 640 |||| |||| || |||||||| |||||||||||||||||||||||||||||||| || || Sbjct 416 TCAACCTTACGGCTATTCCCGCGTTGCTTATGCTCTATCCCTTATCCTCCTCATATCATT 475 Query 641 CACAATCGCAGCAATTATAGGATGTGTTTTTCTTTACACTGGTCAAGGGAAATTTCATGC 700 |||||| |||||||||||||||||| |||| |||||||| |||||||| ||||||||||| Sbjct 476 CACAATTGCAGCAATTATAGGATGTATTTTCCTTTACACGGGTCAAGGAAAATTTCATGC 535 Query 701 TAGCACAACCGATACTTTGGACTATGTCGTGAGTCAAGCGAATCTCACGTCAGAAAACCT 760 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 536 TAGCACAACCGATACTTTGGACTATGTGGTGAGTCAAGCAAATCTCACGTCAGAAAACCT 595 Query 761 CAGGAATGTGTCAGATTATCTTAATGCAGCTAAGAAGGTTGATGTGCAATCCAGCATTTT 820 ||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| | Sbjct 596 CAGGAATGTGTCAGATTATCTCAATGCAGCTAAGAAAGTGGATGTGCAATCCAGCATTCT 655 Query 821 GCCACAAGATGTTCTCTCGAGTATCGACAACATACAGGGAAAGATAAACTCGTCCGCCAC 880 |||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 656 GCCACAGGATGTTCTCTCGAGCATCGACAACATACAGGGAAAGATTAACTCGTCCGCCAC 715 Query 881 AACTCTTTCTGTGAAAACAATGGAGAACCAAGACAAGATACAAAATGTCTTGGACATCAT 940 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 716 AACTCTTTCTGTGAAAACAATGGAGAACCAAGACAAGATTCAAAATGTCTTGGACAGCAT 775 Query 941 GAGACTTGCTCTCGTCATCATCGCTGCTGTGATGCTTTTCCTTGCGTTTATCGGATTTCT 1000 ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 776 GAGACTTGCGCTCGTCATCATCGCTGCTGTGATGCTTTTCCTTGCATTTATTGGATTTCT 835 Query 1001 TCTCTCTATTTTTGGACTGCAATGCCTTGTATATACGTTGGTGATCCTTGGTTGGATTCT 1060 ||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 836 TCTCTCTATCTTTGGACTGCAGTGCCTTGTGTATACGTTGGTGATCCTTGGTTGGATTCT 895 Query 1061 CGTCACGGTTACCTTCGTCTTATGTGGTGGATTTTTACTTCTACACAACGTTGTAGGGGA 1120 ||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| Sbjct 896 CGTCACGGTTACCTTCGTCTTGTGTGGTGGATTTCTGCTTCTACACAACGTTGTAGGGGA 955 Query 1121 TACGTGTGTTGCGATGGACCAATGGGTCCAAAACCCAACAGCTCACACGGCTCTAGACGA 1180 ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || Sbjct 956 TACGTGTGTTGCGATGGACCAGTGGGTCCAAAACCCAACAGCCCACACGGCTCTAGATGA 1015 Query 1181 TATTCTACCGTGTGTTGATAATGCAACCGCGAGAGAAACATTG-ACTCGGACTAAGCTTG 1239 |||| |||| ||||| ||||||||||||||||||||||||||| | |||||||||||||| Sbjct 1016 TATTTTACCATGTGTAGATAATGCAACCGCGAGAGAAACATTGGA-TCGGACTAAGCTTG 1074 Query 1240 TAACATACCAGTTGGTCAATCTTCTTGACAATGCCATTAGCAACATGACCAACAGGAATT 1299 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1075 TGACATACAAGTTGGTCAATCTTCTTGACAATGCCATTAGCAACATGACCAACAGGAACT 1134 Query 1300 TCCCGCCTCAATTCCGGCCTCTTTATTACAACCAGTCAGGTCCACTAATGCCTCTACTCT 1359 ||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||| Sbjct 1135 TCCCGCCTCAACTCCGCCCTCTTTATTACAACCAGTCAGGTCCACTAATGCCTTTGCTCT 1194 Query 1360 GTAACCCCTTCAACGCTGATCTCTCTGACCGCCAATGCCAGCCTGGTCAGGTCCATCTGA 1419 ||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||| Sbjct 1195 GTAACCCCTTCAATGCTGATCTCTCTGATCACCAGTGCCAGCCTGGTCAGGTCCATCTGA 1254 Query 1420 ACAATGCAACCGAGGTGTGGAAGAACTTCACTTGCCAAATTGTAACACCGGGAACATGTA 1479 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1255 ACAATGCAACAGAGGTGTGGAAGAACTTCACTTGCCAAATCGTAACACCGGGAACATGCA 1314 Query 1480 GTACACCGGGACGGTTGACACCAAAGCTTTACAGCCAGATGGCTGCAGCGGTTAATGTAA 1539 | |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1315 GCACACAGGGACGGTTGACACCAAAGCTTTACAGTCAGATGGCTGCAGCAGTTAATGTAA 1374 Query 1540 GCTATGGTTTGTACAAGTACGGACCGTTCTTGGCAGACCTACAAGGGTGTGACTTCGTGA 1599 ||||||| ||||||||||||| || |||||||||||||| |||||||||||||| |||| Sbjct 1375 GCTATGGACTGTACAAGTACGGTCCATTCTTGGCAGACCTGCAAGGGTGTGACTTTGTGA 1434 Query 1600 GGTCTACATTCACTGATATAGAGAGGGATCATTGTCCGGGACTTAAGAGATACACACAAT 1659 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1435 GGTCTACATTCACTGCTATAGAGAGGGATCATTGTCCGGGACTGAAGAGATACACACAGT 1494 Query 1660 GGATCTATGTGGGTCTTGTGGTGGTGTCTGCTTCTGTAATGTCATCTTTGGTGTTTTGGG 1719 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1495 GGATCTATGTGGGTCTTGTGGTAGTGTCTGCTTCTGTAATGTCATCTTTGGTGTTTTGGG 1554 Query 1720 TTATATATGCGAGAGAGAGGAGGCACCGGGTTTACACAAAAGACTACAACGCTATGCACT 1779 |||||||| || | |||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1555 TTATATATTCGCGGGAGAGGAGGCACCGAGTTTACACAAAAGACTACAATGCTATGCACT 1614 Query 1780 CTGAAGATCCACGAAGCAAGGGCCACTGAGAGATTATGTTCTTTTGGAG 1828 ||||||||||||||||||||||||| ||||| ||||| ||| ||||||| Sbjct 1615 CTGAAGATCCACGAAGCAAGGGCCAGTGAGATATTATATTCCTTTGGAG 1663 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75532955835 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5