BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12462.1
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931044 jgi|Araly1|931044|scaffold_303501.1 1158 0.0
> Ahg931044 jgi|Araly1|931044|scaffold_303501.1
Length=790
Score = 1158 bits (627), Expect = 0.0
Identities = 731/782 (93%), Gaps = 4/782 (1%)
Strand=Plus/Plus
Query 19 cacacacacGATGGATTGGTTCTCATGGCTGTCTAAAACCGACCTTGATCCGACCCTAAG 78
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 CACACAGACGATGGATTGGTTCTCATGGCTGTCTAAAACCGACCTTGATCCGACCCTAAG 70
Query 79 CTACGAGTACGGACTCATATTCGCCCAAAAGAAGCTCCAGGGTGAAGACATCGCCCTTTT 138
|||||||||||||||||| ||||| ||||||||||||||| |||||||||| || |||||
Sbjct 71 CTACGAGTACGGACTCATCTTCGCTCAAAAGAAGCTCCAGAGTGAAGACATAGCTCTTTT 130
Query 139 CAACCACAACTTTCTCCGGCGACTTGGTGTTACTGT-GACCAAACACCGCGTAGAGATTC 197
|||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||
Sbjct 131 CAACCACAACTTTCTCCGGCGACTTGGTATTACTGTAG-CCAAACACCGCGTAGAAATTC 189
Query 198 TCAAACTCTCAAAGAGAGAAACACAAGCACTCAGCTCCTATAACCATCGTCC-TGTCTCG 256
||||||| ||||||||||||||||||||||| ||||||||| | |||||||| | |||||
Sbjct 190 TCAAACTTTCAAAGAGAGAAACACAAGCACTTAGCTCCTATCAGCATCGTCCCT-TCTCG 248
Query 257 GCCAAACTCATATCTGTCGTCATCAAGGCAACCAAAAGTGTCGGCAATCGCTTAAACAAG 316
|||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 249 GCCAAACTCATATCCGTCGTCATCAAGGCCACCAAAAGTGTCTGCAATCGCTTAAACAAG 308
Query 317 TGGCTTTCTCTCGGAGGAACCGCCGTAGTTGAACCGCTCAAGGAGAAGCAGTCGCCGCCG 376
||||||| |||||||||||| ||||| |||||||| || |||||||| ||||||||| ||
Sbjct 309 TGGCTTTATCTCGGAGGAACTGCCGTGGTTGAACCTCTTAAGGAGAAACAGTCGCCGACG 368
Query 377 CCTGCCTACCGTACCGGAGCCTTTTTGACTGGTAATAACAATAAAGTCAATGCTGAAAAA 436
| |||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 369 CGAGCCTGCCGTACCGCAGCGGTTTTGACTGGTAATAATAATAAAGTCAATGCTGAAAAA 428
Query 437 GCTGTGGTACAAGTGGAGAGATTACCTGTGATAAAGAGGAAAAGGATTGTGAAATCTGGA 496
|||| ||||||||||||||||||||||||||| |||||||||| ||| | ||||||||||
Sbjct 429 GCTGAGGTACAAGTGGAGAGATTACCTGTGATCAAGAGGAAAATGATAGCGAAATCTGGA 488
Query 497 CCGTTGGATCGAAACCATGGAATACAAGAGAAAATGACGTTAGTAAGCAACCGAAGCATG 556
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 489 CCGTTGGATCTAAAACATGGAATGCAAGAGAAAATGACGTTAGTAAGCAACCGAAGCATG 548
Query 557 AACCTATCTGGACCGTTGGATAGAAGTGTCCAAGAAAGACTCATTTTAGCTTATAGAAGC 616
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 549 AACCTATCTGGACCGTTGGATCGAAGTGTCCAAGAAAGACTCATATTAGCTTATAGAAGC 608
Query 617 CCTATTGTGTCGGGACAGTTAGATGGAAACTTAAACGAACGATTGAGATTATCAGGGCCG 676
||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 609 CCTGTTGTGTCGGGACAGTTAGATGGAAACTTAAACGAATGGTTGAGATTATCAGGGCCG 668
Query 677 TTGAAAGGAAGACCACCAAGCCCAAGTGTGTATGTGGAGTACAATAAAAGGGATGATGAC 736
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 669 TTGAAAGGAAGACCACCGAGCCCAAGTGTGTATGTGGAGTACAATAAAAGAGACGATGAC 728
Query 737 ACACGATGGGATGCTATGTTTCATAACTTGAAGCCTACGTAGATCTTGAGTATAAATTGT 796
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 729 ACAAGATGGGATGCTATGTTTCATAACTTGAAGCCTACGTAGATCTTGAGTAGAAATTGT 788
Query 797 TT 798
||
Sbjct 789 TT 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34386871134
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5