BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12475.1
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
Ahg319407 jgi|Araly1|319407|fgenesh1_pm.C_scaffold_3002423 422 7e-118
> Ahg319407 jgi|Araly1|319407|fgenesh1_pm.C_scaffold_3002423
Length=258
Score = 422 bits (228), Expect = 7e-118
Identities = 248/258 (96%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 1 ATGGCTATCAGCAAGAAAATGTTAACCACATTTGTCCTCACTATCCTCTTAGCCGTATCT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTATCAGCAAGAAAATGTTAACTGTATTTGTCCTCACTATCCTCTTAGCCGTATCT 60
Query 61 TTTGTTCATTGCTCCGATAGAACTTCTGGTGTTGGTATAAATCAAGAGTATGCAAAATGC 120
||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 61 TTTGTCCATTGCTCCGATAGAACCTCTGGTTTTGGTATAAATCAAGAGTATGCAAAATGC 120
Query 121 TACGACCTAGCTGATTGTCAAAAACCCAAAGTGGACGATGCCGCATGCGAGAGGTTTTGT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TACGACCTAGCTGATTGTCAAAAACCCAAAGTGGACGATGCGGCATGCGAGAGGTTTTGT 180
Query 181 GGAGCTAAAAGCTTTTTATTATATGGTAAATGTGATACTGCTACCAACAAATGTTGTTGT 240
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 181 GGAGCTAAAAGCTTTTTATTATATGGTAGATGTGATGTTGCTACCAACAAATGTTGTTGT 240
Query 241 AAGTCTAAGACGAAATAA 258
||||||||||||||||||
Sbjct 241 AAGTCTAAGACGAAATAA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8974241335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5