BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G12480.2
Length=1670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906053 jgi|Araly1|906053|Al_scaffold_0003_3181 1958 0.0
Ahg494806 jgi|Araly1|494806|fgenesh2_kg.8__622__AT5G42240.1 721 0.0
Ahg494807 jgi|Araly1|494807|fgenesh2_kg.8__623__AT5G42230.1 693 0.0
Ahg331179 jgi|Araly1|331179|fgenesh1_pm.C_scaffold_8000522 682 0.0
Ahg497456 jgi|Araly1|497456|fgenesh2_kg.482__1__AT5G42230.1 313 3e-84
Ahg913585 jgi|Araly1|913585|Al_scaffold_0001_3839 296 3e-79
> Ahg906053 jgi|Araly1|906053|Al_scaffold_0003_3181
Length=1356
Score = 1958 bits (1060), Expect = 0.0
Identities = 1203/1272 (95%), Gaps = 9/1272 (1%)
Strand=Plus/Plus
Query 197 TTTGCTGAAGGTTATCCGGAAGAAGACT-TGGTGGCCAGGCTACCTGGTCAACCAAACGT 255
|||||||||||||||||||||||||| | |||||| ||||| ||||||||||| || ||
Sbjct 91 TTTGCTGAAGGTTATCCGGAAGAAGA-TATGGTGGTGAGGCTGCCTGGTCAACCGAAGGT 149
Query 256 CGGGTTCAGACAATTTGCTGGATATGTCGATGTGGACTCGGAAAATGGTCGTAGTCTTTT 315
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 150 CGGGTTCAGACAATTCGCTGGATATGTCGATGTGGACTCGGAGAATGGTCGTAGTCTTTT 209
Query 316 TTACTACTACGTGGAGGCTGTAAAAGAACCTGACACTAAGCCCTTAACCCTTTGGCTCAA 375
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TTACTACTATGTTGAGGCTGTAAAAGAACCTGACACTAAGCCCTTAACCCTTTGGCTCAA 269
Query 376 TGGAGGTCCAGGTTGTTCTTCAGTTGGTGGAGGAGCTTTCACTGAGTTAGGTCCATTTTA 435
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 270 TGGAGGTCCAGGTTGTTCTTCAGTTGGTGGAGGAGATTTCACTAAGTTAGGTCCATTTTA 329
Query 436 TCCTACGGGCGATGGCCGTGGCCTTCGCTTGAACTCCATGTCTTGGAACAAAGCTTCGAA 495
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 330 CCCCACGGGTGATGGCCGTGGCCTCCGCTTGAACTCCATGTCTTGGAACAAAGCCTCGAA 389
Query 496 CTTGTTATTTGTGGAGTCACCAGCCGGAGTAGGATGGTCATACTCTAACAGAAGTTCGGA 555
| || ||||||||||||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 390 CCTGCTATTTGTGGAGTCACCAGCCGTAGTAGGATGGTCATACTCTAACAGAAGCTCTAA 449
Query 556 TTACAACACTGGGGACAAGTCTACTGTCAATGATATGCTTGTGTTCTTGTTGAGATGGTT 615
||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 450 TTATAACACCGGGGACAAGTCTACTGCCAATGATATGCTTGTGTTCTTATTGAGATGGTT 509
Query 616 CAACAAGTTCCCAGAGTTGAAGTCTCGCGACCTCTTTCTCACTGGCGAAAGCTACGCAGG 675
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CAACAAGTTCCAAGAGTTGAAGTCTCGCGACCTCTTTCTCACTGGCGAAAGCTACGCAGG 569
Query 676 GCATTACATACCTCAACTGGCTGATGTGATACTCAGCTACAATTCACGCTCAAGTGGGTT 735
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 570 GCACTACATACCTCAACTGGCTGATGTGATACTCAGCTACAATTCACGCTCAAATGGGTT 629
Query 736 CAAATTTAACGTCAAAGGCATTGCAATTGGGAATCCACTTCTGAAGCTTGACAGGGACT- 794
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 630 CAAATTTAACGTCAAAGGCATTGCAATTGGCAATCCACTTCTGAAGCTTGACAGGGA-TG 688
Query 795 TTGCAGCTGCATACGAGTACTTCTGGTCACATGGGATGATCTCTGATGAAGTAAGACTCA 854
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 689 TTGCAGCTGCATACGAGTACTTCTGGTCGCATGGGATGATCTCTGATGAAGTAAGACTCA 748
Query 855 CAATCATGAACCAATGTGACTTTGCCAATCCAAAGAACATGAGCAATGCTTGTATATATG 914
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 749 CAATCATGAACCAATGTGACTTTGCCAATCCAAAGAACATGAGTAATGCTTGTATACATG 808
Query 915 CAATCGTTGAATCCAGCGTCCTCACTGAGTATATCAACAGCTATCACATTCTCCTCGATG 974
| |||||||| || ||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 809 CTATCGTTGACTCAAGCGTCCTCACTGAGTATATCAATAGCTATCATGTTCTCCTTGATG 868
Query 975 TATGTTACCCTTCTATTGTTCAGCAAGAGCTAAGGCTCAAGAAAATGAATGCGCTTCACG 1034
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 869 TATGTTACCCTTCTATTGTCCAGCAAGAGCTGAGGCTCAAGAAAATGAATGCGCTTCACG 928
Query 1035 CTAACCGCACTCGCCTACCTTATGAATGGACTATGTGCAGCAACCGGTTAAACTACAGTG 1094
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 929 CAAACCGCACTCGCCTACCTTATGAGTGGACTATGTGCAGCAACCGGTTAAACTACAGTG 988
Query 1095 GCATAGACGGGTACATTGACATGCTTCCGAGTCTTAAGAGAATTATTCAGAACCAAACTC 1154
|||| || || ||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 989 GCATCGATGGATACATCGACATGCTTCCGATTCTTAAGAGAATTATACAGAACCAAACTC 1048
Query 1155 CTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAATTCCACTTCAAAGTTCAAGAACAC 1214
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1049 CTGTTTGGATCTTCAGTGGAGACCAAGATTCTGTAATTCCACTTCAAAGTTCAAGAACAC 1108
Query 1215 TCGTACGAGAACTTGCTGAGGATCTCAACTTCAAGACCACTATTCCCTATGGAGCTTGGT 1274
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1109 GCGTACGAGAACTTGCTCAGGATCTCAACTTCAAGACCACTGTTCCCTATGGAGCCTGGT 1168
Query 1275 TCCACAAAGAACAGGTAGTTGGTGGCTGGGTCACAGAGTATGGGAATCTACTGACCTTTG 1334
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 TCCACAAAGAACAGGT--T-GGTGGCTGGGTCACAGAGTATGGGAATCTACTGACCTTTG 1225
Query 1335 CAACGGTGAGAGGAGCGGCTCATATGGTG-CCGTATGCGGAGCCCTCACGAGCTCTGCAC 1393
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1226 CAACGGTGAGAGGAGCGGCTCATATGGTGGCC-TATGCGGAGCCCTCACGAGCTCTGCAC 1284
Query 1394 ATGTTCAGTAGCTTTATGAATGGCCGGAGATTGCCCAACAAACCAGATTTAAAGTCTTCT 1453
|||||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1285 ATGTTCAGTACCTTTGTGACTGGCCGGAGATTGCCCAACAAACCAGATTTAAAATCTTCT 1344
Query 1454 ACTGATGATTGA 1465
| ||||||||||
Sbjct 1345 ATTGATGATTGA 1356
> Ahg494806 jgi|Araly1|494806|fgenesh2_kg.8__622__AT5G42240.1
Length=1686
Score = 721 bits (390), Expect = 0.0
Identities = 706/854 (83%), Gaps = 40/854 (5%)
Strand=Plus/Plus
Query 197 TTTGCTGAAGGTTATCCGGAAGAAGACTTGGTGGCCAGGCTACCTGGTCAACCAAAC-GT 255
||||| || || || || |||||||| ||||||| ||||| || |||||||| ||| ||
Sbjct 80 TTTGCAGATGGGTACCCAGAAGAAGATTTGGTGGTGAGGCTGCCAGGTCAACC-AACTGT 138
Query 256 CGGGTTCAGACAAT-TTGCTGGATATGTCGATGTGGACTCG-GAAA-ATGGTCGTAGTCT 312
||||||||||||| | | || ||||||||||| || | | |||| |||||| |||||
Sbjct 139 TGGGTTCAGACAATACT-CAGGTTATGTCGATGTCGA-T-GTGAAAGCTGGTCGGAGTCT 195
Query 313 TTTTTACTACTACGTGGAGGCTGTAAAAGAACCTGACACTAAGCCCTTAACCCTTTGGCT 372
|| || ||||||||||||||||| ||| |||| ||||| || || || |||||||||||
Sbjct 196 GTTCTATTACTACGTGGAGGCTGTGAAACAACCAGACACAAAACCATTGACCCTTTGGCT 255
Query 373 CAATGGAGGTCCAGGTTGTTCTTCAGTTGGTGGAGGAGCTTTCACTGAGTTAGGTCCATT 432
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 256 CAATGGAGGTCCAGGTTGTTCTTCAATTGGTGGAGGAGCTTTCACTGAGTTGGGTCCATT 315
Query 433 TTATCCTACGGGCGATGGCCGTGGCCTTCGC-TTGAACTCCATGTCTTGGAACAAAGCTT 491
||| || || ||||||||||||||||||||| || |||||| |||||||||||||||| |
Sbjct 316 TTACCCCACTGGCGATGGCCGTGGCCTTCGCGTT-AACTCCTTGTCTTGGAACAAAGCCT 374
Query 492 CGAACTTG-TTATTTGTGGAGTCACCAGCCGGAGTAGGATGGTCATACTCTAACAGAAGT 550
|||||||| || |||||||||||||| || |||||||||||||| ||||| ||| ||||
Sbjct 375 CGAACTTGCTT-TTTGTGGAGTCACCGGCTGGAGTAGGATGGTCTTACTCCAACCGAAGC 433
Query 551 TCGGATTACAACACTGGGGACAAGTCTACTG-TCA-ATGATATGCTTGTGTTCTTGTTGA 608
| ||||||||||| |||||||| |||||| | | | |||||||| |||||||||||||
Sbjct 434 ACTGATTACAACACCGGGGACAAAACTACTGCT-AGA-GATATGCTCGTGTTCTTGTTGA 491
Query 609 GATGGTTCAACAAGTTCCCAGAGTTGAAGTCTCGCGACCTCTTTCTCACTGGCGAAAGCT 668
||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 492 GATGGTTTGACAAGTTCCCAAAGTTGAAGTCTCGGGACCTCTTTCTTACTGGCGAAAGCT 551
Query 669 ACGCAGGGCATTACATACCTCAACTGGCTGATGTGATACTCAGCTACAATTCACGCTCAA 728
| || || ||||||||||| ||| ||||||||| ||| |||||||||||| ||| ||| |
Sbjct 552 ATGCTGGACATTACATACCGCAATTGGCTGATGCGATTCTCAGCTACAATGCACACTCCA 611
Query 729 GTGGGTTCAAATTTAACGTCAAAGGCATTGCAATTGGGAATCCACTTCTGAAGCTTGACA 788
|||| |||||||| ||| | |||||| ||||||| ||||||||||| ||||| |||||||
Sbjct 612 GTGGATTCAAATTCAACATTAAAGGCGTTGCAATCGGGAATCCACTACTGAAACTTGACA 671
Query 789 GGGACTTTGCAGCTGCATACGAGTACTTCTGGTCACATGGGATGATCTCTGATGAAGT-A 847
| ||| | ||||| | ||||||| ||||||||| ||||||||||| ||||||||| | |
Sbjct 672 GAGACAGTCCAGCTACGTACGAGTTCTTCTGGTCGCATGGGATGATTTCTGATGAACTCA 731
Query 848 AGACTCACAATCATGAACCAATGTGACTTTGC------CA-AT---CCAA-----AGAAC 892
| ||||||||||| || |||||||||||||| || || ||| | |||
Sbjct 732 A-ACTCACAATCACGAGCCAATGTGACTTTGATGATTACACATTTGCCAGCCCCCATAAC 790
Query 893 ATGAGCAATGCTTGTATAT-ATGCAATC-GTTGAATCCAG---CGTCCTCACTGAGTATA 947
| |||| || || | || |||| || || ||| || | | || ||| |||||||
Sbjct 791 GTAAGCACGGCCTGCA-ATGATGCTATTAGT-GAAACCGGAAACATCATCAGTGAGTATG 848
Query 948 TCAACAGCTATCACATTCTCCTCGATGTATGTTACCCTTCTATTGTTCAGCAAGAGCTAA 1007
|||||| |||| | |||||||||| |||||||| || ||||| || ||||||||||| |
Sbjct 849 TCAACAACTATGATGTTCTCCTCGACGTATGTTATCCGTCTATCGTCCAGCAAGAGCTGA 908
Query 1008 GGCTCAAGAAAATG 1021
||||||||||||||
Sbjct 909 GGCTCAAGAAAATG 922
Score = 399 bits (216), Expect = 2e-110
Identities = 390/472 (83%), Gaps = 20/472 (4%)
Strand=Plus/Plus
Query 1025 GCGCTTCACGCTAACCGCACTCGCCTACCTTATGAATGGACTATGTGCAGCAACCGGTTA 1084
|||||||| || ||||| |||| || |||||||||||| | ||||||||| | |||
Sbjct 1004 GCGCTTCATGCGAACCGTACTCATCTGCCTTATGAATGGTCAATGTGCAGCGGTCAGTTG 1063
Query 1085 AACTACAGTGGCATAGACGGGTACATTGACATGCTTCCGAGTCTTAAGAGAATTATTCAG 1144
|||||| || || || | | | || ||||||||||||| ||| ||||||||||| |||
Sbjct 1064 AACTACTCTGACACCGATGCGAATATCGACATGCTTCCGATTCTGAAGAGAATTATACAG 1123
Query 1145 AACCAAACTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAATTCCACTTCAAAG- 1203
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 1124 AACAAAACTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCA-TTCGTCGG 1182
Query 1204 TTCAAGAACACTCGTACGAGAACTTGCTGAGGATCTCAACTTCAAGACCACTA-TTCCCT 1262
||||||||| |||||| ||||||||||| | |||||||||||| ||||||| | ||||||
Sbjct 1183 TTCAAGAACTCTCGTAAGAGAACTTGCTCACGATCTCAACTTCGAGACCAC-AGTTCCCT 1241
Query 1263 ATGGAGCTTGGTTCCACAAA-GAACAGGTAGTTGGTGGCTGGGTCACAGAGTATGGGAAT 1321
| ||||| |||||||||||| | ||||| | || ||||||| || || || || ||
Sbjct 1242 ACGGAGCCTGGTTCCACAAAAGT-CAGGT--T-GGAGGCTGGGCCATTGAATACGGAAAA 1297
Query 1322 CTACTGACCTTTGCAACGGTGAGAGGAGCGGCTCATATGGTGCCGTATGCGGAGCCCTCA 1381
|||||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1298 CTACTGACGTTTGCAACGGTGAGAGGAGCGGCTCATATGGTACCATATGCACAGCCCTCA 1357
Query 1382 CGAGCTCTGCACATGTTCAGTAGCTTTATGAATGGCCGGAGATTGCCCAACAA-ACCAGA 1440
|||||||| || |||||||||||||| ||| ||||||||||||||||||||| || | |
Sbjct 1358 CGAGCTCTACATTTGTTCAGTAGCTTTGTGAGTGGCCGGAGATTGCCCAACAACAC-ACA 1416
Query 1441 TTTAAAGTCTTCTACTGATGATTGAAAGAGAAGA--TATCTCTTTGAGTAAG 1490
|| ||||||||||||||||||| || ||| ||| ||||| |||||
Sbjct 1417 TT------CTTCTACTGATGATTGAAAAAGCAGAGGTATATCTTTT-GTAAG 1461
> Ahg494807 jgi|Araly1|494807|fgenesh2_kg.8__623__AT5G42230.1
Length=1458
Score = 693 bits (375), Expect = 0.0
Identities = 588/691 (85%), Gaps = 14/691 (2%)
Strand=Plus/Plus
Query 193 GGTTTTTGCTGAAGGTTATCCGGAAGAAGACTTGGTGGCCAGGCTACCTGGTCAACCAAA 252
||| ||||| |||| |||||||||| ||| ||||| | ||||| || ||||||| |||
Sbjct 63 GGTGTTTGCACAAGGGTATCCGGAAGCAGATTTGGTTGTGAGGCTTCCAGGTCAACTAAA 122
Query 253 CGTCGGGTTCAGACAATTTGCTGGATATGTCGATGTGGACTCGGAA-AATGGTCGTAGTC 311
|| | ||||||||| | || || || || ||| | ||| ||| ||| ||||| |
Sbjct 123 GGTTGCGTTCAGACAGTACGCCGGGTACGTTGATCTCGAC-ATGAATGCTGGGCGTAGCC 181
Query 312 TTTTTTACTACTACGTGGAGGCTGTAA-AAGAACCTGACACTAAGCC-CTTAACCCTT-T 368
|||| ||||||| ||||||||||| || || | |||||||| || || | ||| |||| |
Sbjct 182 TTTTCTACTACTTCGTGGAGGCTG-AAGAACACCCTGACACAAAACCGC-TAA-CCTTGT 238
Query 369 GGCTCAATGGAGGTCCAGGTTGTTCTTCA-GTTGGTGGAGGAGCTTTCACTGAGTTAGGT 427
||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 239 GGCTCAATGGAGGTCCAGGTTGTTCTTCAGGTT-GTGGAGGAGCTTTCACTGAGCTAGGT 297
Query 428 CCATTTTATCCTACGGGCGATGGCCGTGGCCTTCGC-TTGAACTCCATGTCTTGGAACAA 486
|||||||| || || ||||||||| |||| |||||| || ||||||||||| ||||||||
Sbjct 298 CCATTTTACCCCACAGGCGATGGCGGTGGTCTTCGCGTT-AACTCCATGTCGTGGAACAA 356
Query 487 AGCTTCGAACTTGTTATTTGTGGAGTCACCAGCCGGAGTAGGATGGTCATACTCTAACAG 546
||| |||||| || | |||||||||||||| | ||||| |||||||| ||||| ||| |
Sbjct 357 AGCATCGAACCTGCTGTTTGTGGAGTCACCGGTTGGAGTTGGATGGTCTTACTCCAACCG 416
Query 547 AAGTTCGGATTACAACACTGGGGACAAGTCTACTGTCAATGATATGCTTGTGTTCTTGTT 606
||| || ||||||||||| || ||||||||||||| || |||||||| |||||||||||
Sbjct 417 AAGCTCTGATTACAACACCGGTGACAAGTCTACTGCCAGCGATATGCTCGTGTTCTTGTT 476
Query 607 GAGATGGTTCAACAAGTTCCCAGAGTTGAAGTCTCGCGACCTCTTTCTCACTGGCGAAAG 666
| |||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 477 GGGATGGTTCGACAAGTTCCCAGAGTTCAAGTCTCGCGACTTCTTTCTCACTGGTGAAAA 536
Query 667 CTACGCAGGGCATTACATACCTCAACTGGCTGATGTGATACTCAGCTACAATTCACGCTC 726
||| ||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||
Sbjct 537 CTATGCAGGACATTACATACCGCAATTGGCTGATGCGATACTCAGCTACAATTCACGCTC 596
Query 727 AAGTGGGTTCAAATTTAACGTCAAAGGCATTGCAATTGGGAATCCACTTCTGAAGCTTGA 786
||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 597 AAGTGGGTTCAAATTCAACATCAAAGGCATTGCAATTGGGAATCCATTTCTGAAGCTTGA 656
Query 787 CAGGGACTTT-GCAGCTGCATACGAGTACTTCTGGTCACATGGGATGATCTCTGATGAAG 845
||| ||| | | |||||||| ||||| ||||||||| || |||||||||||||||||||
Sbjct 657 CAGAGACGTCCG-AGCTGCATTCGAGTTCTTCTGGTCGCACGGGATGATCTCTGATGAAG 715
Query 846 TAAGACTCACAATCATGAACCAATGTGACTT 876
| ||| ||||||||||| || ||||||||
Sbjct 716 TGGGACACACAATCATGAGTCAGTGTGACTT 746
Score = 300 bits (162), Expect = 3e-80
Identities = 362/456 (79%), Gaps = 23/456 (5%)
Strand=Plus/Plus
Query 1025 GCGCTTCACGCTAACCGCACTCGCCTACCTTATGAATGGACTATGTGCAGCAACCGGTTA 1084
|||||||| || |||||||||| || || ||| |||| | ||||||||||||| ||||
Sbjct 991 GCGCTTCATGCGAACCGCACTCATCTGCCATATTCATGGTCAATGTGCAGCAACCTGTTA 1050
Query 1085 AACTACAGTGGCATAGACGGGTACATTGACATGCTTCCGAGTCTTAAGAGAATTATTCAG 1144
|||||| |||||| || | |||| |||||||||||| ||| |||||| |||| |||
Sbjct 1051 AACTACTCTGGCATCGATGCAAACATCAACATGCTTCCGACTCTGAAGAGAGTTATACAG 1110
Query 1145 AACCAAACTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAATTCCACTTCAAAGT 1204
||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 1111 AACAAAATTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCATTTCTGGGA 1170
Query 1205 TCAAGAACACTCGTACGAGAACTTGCTGAGGATCTCAACTTCAAGACCACTA-TTCCCTA 1263
|| |||| ||||| ||||||| || | |||||||| |||||||| || | |||| ||
Sbjct 1171 ACACGAACTGTCGTAAGAGAACTCGCCAACGATCTCAATTTCAAGACGAC-AGTTCCATA 1229
Query 1264 TGGAGCT-TGGTTCCACAAA-GAACAGGTAGTTGGTGGCTGGGTCA-CAGAGTATGGGAA 1320
||||| | |||||||||||| || ||||| | || || |||| || | |||||||| ||
Sbjct 1230 TGGAG-TGTGGTTCCACAAAAGA-CAGGT--T-GGAGGTTGGGCCATC-GAGTATGGAAA 1283
Query 1321 TC-TACTGACCTTTGCAACGGTGAGAGGAGCGGCTCATATGGTGCCGTATGCGGAGCCCT 1379
| |||| || |||||||| |||||||||||||||||| |||| || | || ||||||
Sbjct 1284 -CATACTCACTTTTGCAACAGTGAGAGGAGCGGCTCATGCGGTGGCGAACACGCAGCCCT 1342
Query 1380 CACGAGCTCTGCA-CATGTTCAGTAGCTTTATGAATGGCCGGAGATTGCCCAACAA-ACC 1437
||| ||||||||| | | ||||| | |||| | ||||| |||||||||||||| ||
Sbjct 1343 CACAAGCTCTGCATC-TATTCAGCACCTTTCTTCGTGGCCATAGATTGCCCAACAAGAC- 1400
Query 1438 AGATTTAAAGTCTTCTACTGATGATTGAAAGAGAAG 1473
|||| || | || | | ||||||||||||||||
Sbjct 1401 AGATATA--G-CTA-TGC--ATGATTGAAAGAGAAG 1430
> Ahg331179 jgi|Araly1|331179|fgenesh1_pm.C_scaffold_8000522
Length=1419
Score = 682 bits (369), Expect = 0.0
Identities = 583/687 (85%), Gaps = 12/687 (2%)
Strand=Plus/Plus
Query 196 TTTTGCTGAAGGTTATCCGGAAGAAGACTTGGTGGCCAGGCTACCTGGTCAACCAAAC-G 254
|||||| || || || || |||| ||| || || | | ||| || || ||||| ||| |
Sbjct 63 TTTTGCAGATGGGTACCCAGAAGCAGATTTTGTTGTGAAGCTGCCAGGGCAACC-AACGG 121
Query 255 TCGGGTTCAGACAATTTGCTGGATATGTCGATGTGGACTCGGAAAATGGTCGTAGTCTTT 314
| ||||||||| | || || ||||| ||| | ||| || ||| || |||||||
Sbjct 122 TAACGTTCAGACAGTACGCCGGGTATGTTGATATCGACAAGGTTGTTGGGCGGAGTCTTT 181
Query 315 TTTACTACTACGTGGAGGCTGTAAAA-GAACCTGACACTAAGCCCTTAACCCTT-TGGCT 372
||||||||| ||||||||||| |||| | |||||||| || || |||| | || |||||
Sbjct 182 TTTACTACTTCGTGGAGGCTGAAAAACG-TCCTGACACAAAACCGTTAA-CATTGTGGCT 239
Query 373 CAATGGAGGTCCAGGTTGTTCTTCAGTTGGTGGAGGAGCTTTCACTGAGTTAGGTCCATT 432
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 240 CAATGGAGGTCCAGGTTGTTCTTCTGTTGGTGGAGGAGCTTTCACTGAGCTAGGTCCATT 299
Query 433 TTATCCTACGGGCGATGGCCGTGGCCTTCGC-TTGAACTCCATGTCTTGGAACAAAGCTT 491
||| || || ||||||||||||||||| ||| || ||||||||||| ||||||||||| |
Sbjct 300 TTACCCCACAGGCGATGGCCGTGGCCTCCGCATT-AACTCCATGTCGTGGAACAAAGCAT 358
Query 492 CGAACTTGTTATTTGTGGAGTCACCAGCCGGAGTAGGATGGTCATACTCTAA-CAGAAGT 550
||||| || |||||||||| ||||| || ||||| |||||||||||||| || || |||
Sbjct 359 CGAACCTGCTATTTGTGGACTCACCGGCTGGAGTTGGATGGTCATACTCCAACCA-AAGC 417
Query 551 TCGGATTACAACACTGGGGACAAGTCTACTGTCAATGATATGCTTGTGTTCTTGTTGAGA 610
|| ||||||||||| |||||| ||||| ||| || |||||||||||||||||||||||||
Sbjct 418 TCTGATTACAACACCGGGGACGAGTCTGCTGCCAGTGATATGCTTGTGTTCTTGTTGAGA 477
Query 611 TGGTTCAACAAGTTCCCAGAGTTGAAGTCTCGCGACCTCTTTCTCACTGGCGAAAGCTAC 670
|||||| | |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 478 TGGTTCGATAAGTTCCCGGAATTGAAGTCTCGCGACCTCTTTCTCACAGGCGAAAGCTAT 537
Query 671 GCAGGGCATTACATACCTCAACTGGCTGATGTGATACTCAGCTACAATTCACGCTCAAGT 730
|| || ||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||
Sbjct 538 GCTGGACATTACATACCTCAACTGGCTGATGCGATTCTCAGCTACAATTCACACTCGAGC 597
Query 731 GGGTTCAAATTTAACGTCAAAGGCATTGCAATTGGGAATCCACTTCTGAAGCTTGACAGG 790
||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 598 GGGTTCAAATTCAACATCAAAGGCATTGCGATTGGGAATCCACTTCTTAAGCTTGACAGG 657
Query 791 GACTTTGCAGCTGCATACGAGTACTTCTGGTCACATGGGATGATCTCTGATGA-AGTAAG 849
||| || |||||| |||||||| ||||||||| ||||| |||||||||||| | ||| |
Sbjct 658 GACATTCCAGCTGTATACGAGTTCTTCTGGTCGCATGGCATGATCTCTGAT-ATAGTGGG 716
Query 850 ACTCACAATCATGAACCAATGTGACTT 876
|| |||||||| || |||||||||||
Sbjct 717 ACGCACAATCAGGAGTCAATGTGACTT 743
Score = 324 bits (175), Expect = 2e-87
Identities = 343/423 (81%), Gaps = 15/423 (4%)
Strand=Plus/Plus
Query 1025 GCGCTTCACGCTAACCGCACTCGCCTACCTTATGAATGGACTATGTGCAGCAACCGGTTA 1084
||||||||||| |||||||||| || |||||||||||| || |||||||||||| ||||
Sbjct 988 GCGCTTCACGCAAACCGCACTCATCTGCCTTATGAATGGTCTTTGTGCAGCAACCTGTTA 1047
Query 1085 AACTACAGTGGCATAGACGGGTACATTGACATGCTTCCGAGTCTTAAGAGAATTATTCAG 1144
|||||| |||||| || | ||| ||||||||||| ||| ||||||||||| |||
Sbjct 1048 AACTACTCTGGCATCGATGTAAACACCAACATGCTTCCGCCTCTGAAGAGAATTATACAG 1107
Query 1145 AACCAAACTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAATTCCACTTCAAAGT 1204
||| ||| ||| ||||||||||||||||||||||||||||| ||| ||||| ||| |
Sbjct 1108 AACAAAATTCCGGTTTGGATCTTCAGTGGAGATCAAGATTCGGTAGTTCCATTTCTTGGA 1167
Query 1205 TCAAGAACACTCGTACGAGAACTTGCTGAGGATCTCAACTTCAAGACCACTA-TTCCCTA 1263
||||||| |||||| |||||| || || |||||||| |||||||| || | |||| ||
Sbjct 1168 ACAAGAACTGTCGTACAAGAACTCGCCGACGATCTCAATTTCAAGACGAC-AGTTCCATA 1226
Query 1264 TGGAGCT-TGGTTCCACAAA-GAACAGGTAGTTGGTGGCTGGGTCA-CAGAGTATGGGAA 1320
||||| | |||||||| ||| || ||||| | || ||||||| || | |||||||| ||
Sbjct 1227 TGGAG-TGTGGTTCCATAAAAGA-CAGGT--T-GGAGGCTGGGCCATC-GAGTATGGAAA 1280
Query 1321 TCTACTGACCTTTGCAACGGTGAGAGGAGCGGCTCATATGGTGCCGTATGCGGAGCCCTC 1380
||||| || |||||||| |||||||||||||||||| |||| |||| | |||||||
Sbjct 1281 CCTACTCACGTTTGCAACAGTGAGAGGAGCGGCTCATGCGGTGGCGTACAAGCAGCCCTC 1340
Query 1381 ACGAGCTCTGCA-CATGTTCAGTAGCTTTATGAATGGCCGGAGATTGCCCAACAA-ACCA 1438
||||||||||| | ||||||| | |||| || ||| | ||||||||| ||||| |||
Sbjct 1341 TCGAGCTCTGCATC-TGTTCAGCACCTTTGTGCGTGGACAGAGATTGCCTAACAAGACC- 1398
Query 1439 GAT 1441
|||
Sbjct 1399 GAT 1401
> Ahg497456 jgi|Araly1|497456|fgenesh2_kg.482__1__AT5G42230.1
Length=1390
Score = 313 bits (169), Expect = 3e-84
Identities = 387/487 (79%), Gaps = 35/487 (7%)
Strand=Plus/Plus
Query 193 GGTTTTTGCTGAAGGTTATCCGGAAGAAGACTTGGTGGCCAGGCTACCTGGTCAACCAAA 252
||| ||||| |||| |||||||||| ||| ||||| | ||||| || ||||||| |||
Sbjct 63 GGTGTTTGCACAAGGGTATCCGGAAGCAGATTTGGTTGTGAGGCTTCCAGGTCAACTAAA 122
Query 253 CGTCGGGTTCAGACAATTTGCTGGATATGTCGATGTGGACTCGGAA-AATGGTCGTAGTC 311
|| | ||||||||| | || || || || ||| | ||| ||| ||| ||||| |
Sbjct 123 GGTTGCGTTCAGACAGTACGCCGGGTACGTTGATCTCGAC-ATGAATGCTGGGCGTAGCC 181
Query 312 TTTTTTACTACTACGTGGAGGCTGTAA-AAGAACCTGACACTAAGCC-CTTAACCCTT-T 368
|||| ||||||| ||||||||||| || || | |||||||| || || | ||| |||| |
Sbjct 182 TTTTCTACTACTTCGTGGAGGCTG-AAGAACACCCTGACACAAAACCGC-TAA-CCTTGT 238
Query 369 GGCTCAATGGAGGTCCAGGTTGTTCTTCAG-TTGGTGGAGGAGCTTTCACTGAGTTAGGT 427
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 239 GGCTCAATGGAGGTCCAGGTTGTTCTTCAGGTTG-TGGAGGAGCTTTCACTGAGCTAGGT 297
Query 428 CCATTTTATCCTACGGGCGATGGCCGTGGCCTTCGCTTGAACTCCATGTCTTGGAACAAA 487
|||||||| || || ||||||||| |||| |||||| | || | | |||
Sbjct 298 CCATTTTACCCCACAGGCGATGGCGGTGGTCTTCGC-----C---AT--C--G-AAC--- 341
Query 488 GCTTCGAACTTGTTATTTGTGGAGTCACCAGCCGGAGTAGGATGGTCATACTCTAACAGA 547
|| | || ||| | ||||||| ||| | ||||| |||||||| ||||| ||| ||
Sbjct 342 -CT--G--CT-GTT-T--GTGGAGTGACCGGTTGGAGTTGGATGGTCTTACTCCAACTGA 392
Query 548 AGTTCGGATTACAACACTGGGGACAAGTCTACTGTCAATGATATGCTTGTGTTCTTGTTG 607
|| || ||||||||||| || ||||||||||||| || |||||||| ||||||||||||
Sbjct 393 AGCTCTGATTACAACACCGGTGACAAGTCTACTGCCAGCGATATGCTCGTGTTCTTGTTG 452
Query 608 AGATGGTTCAACAAGTTCCCAGAGTTGAAGTCTCGCGACCTCTTTCTCACTGGCGAAAGC 667
|||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||| |
Sbjct 453 GGATGGTTCGACAAGTTCCCAGAGTTCAAGTCTCGCGACTTCTTTCTCACTGGTGAAAAC 512
Query 668 TACGCAG 674
|| ||||
Sbjct 513 TATGCAG 519
Score = 302 bits (163), Expect = 7e-81
Identities = 340/424 (80%), Gaps = 17/424 (4%)
Strand=Plus/Plus
Query 1025 GCGCTTCACGCTAACCGCACTCGCCTACCTTATGAATGGACTATGTGCAGCAACCGGTTA 1084
|||||||| || |||||||||| || || ||| |||| | ||||||||||||| ||||
Sbjct 928 GCGCTTCATGCGAACCGCACTCATCTGCCATATTCATGGTCAATGTGCAGCAACCTGTTA 987
Query 1085 AACTACAGTGGCATAGACGGGTACATTGACATGCTTCCGAGTCTTAAGAGAATTATTCAG 1144
|||||| |||||| || | |||| |||||||||||| ||| |||||| |||| |||
Sbjct 988 AACTACTCTGGCATCGATGCAAACATCAACATGCTTCCGACTCTGAAGAGAGTTATACAG 1047
Query 1145 AACCAAACTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAATTCCACTTCAAAGT 1204
||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 1048 AACAAAATTCCTGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAGTTCCATTTCTGGGA 1107
Query 1205 TCAAGAACACTCGTACGAGAACTTGCTGAGGATCTCAACTTCAAGACCACTA-TTCCCTA 1263
|| |||| ||||| ||||||| || | |||||||| |||||||| || | |||| ||
Sbjct 1108 ACACGAACTGTCGTAAGAGAACTCGCCAACGATCTCAATTTCAAGACGAC-AGTTCCATA 1166
Query 1264 TGGAGCT-TGGTTCCACAAA-GAACAGGTAGTTGGTGGCTGGGTCA-CAGAGTATGGGAA 1320
||||| | |||||||||||| || ||||| | || ||||||| || | || ||||| ||
Sbjct 1167 TGGAG-TGTGGTTCCACAAAAGA-CAGGT--T-GGAGGCTGGGCCATC-GATTATGGAAA 1220
Query 1321 TC-TACTGACCTTTGCAACGGTGAGAGGAGCGGCTCATATGGTGCCGTATGCGGAGCCCT 1379
| |||| || |||||||| |||||||||||||||||| |||| || | || ||||||
Sbjct 1221 -CATACTCACTTTTGCAACAGTGAGAGGAGCGGCTCATGCGGTGGCGAACACGCAGCCCT 1279
Query 1380 CACGAGCTCTGCA-CATGTTCAGTAGCTTTATGAATGGCCGGAGATTGCCCAACAA-ACC 1437
||||||||||||| | | ||||| | |||| | ||||| |||||||||||||| ||
Sbjct 1280 CACGAGCTCTGCATC-TATTCAGCACCTTTCTTCGTGGCCATAGATTGCCCAACAAGAC- 1337
Query 1438 AGAT 1441
||||
Sbjct 1338 AGAT 1341
> Ahg913585 jgi|Araly1|913585|Al_scaffold_0001_3839
Length=1440
Score = 296 bits (160), Expect = 3e-79
Identities = 328/408 (80%), Gaps = 15/408 (4%)
Strand=Plus/Plus
Query 1034 GCTAACCGCACTCGCCTACCTTATGAATGGACTATGTGCAGCAACCGGTT-AAACTACAG 1092
||||| || |||| || || ||| ||||| ||||||| |||| || || ||| ||||
Sbjct 1018 GCTAATCGAACTCAACTGCCATATCAATGGTCTATGTGTAGCAGCCTCTTGAAA-TACAA 1076
Query 1093 TGGCA-TAGACGGGTACATTGACATGCTTCCGAGTCTTAAGAGAATTATTCAGAACCAAA 1151
| || | |||||| ||| | |||||||| | ||||||||| || || || | ||||
Sbjct 1077 TTACACT-GACGGGAACACCAATATGCTTCCAATTCTTAAGAGGATCGTTAAG-AGCAAA 1134
Query 1152 CTCC-TGTTTGGATCTTCAGTGGAGATCAAGATTCTGTAATTCCACTTCAAAGTTCAAGA 1210
||| ||||||| |||||||||| ||| ||||||||||||||||||||| | |||||
Sbjct 1135 GTCCATGTTTGGGTCTTCAGTGGGGATGAAGATTCTGTAATTCCACTTCTTGGATCAAGG 1194
Query 1211 ACACTCGTACGAGAACTTGCTGAGGATCTCAACTTCAAGACCACTA-TTCCCTATGGAGC 1269
|| | ||| ||||||||| || |||||||||||||| ||||| | |||||||||||||
Sbjct 1195 ACTTTGGTAAAAGAACTTGCAGATGATCTCAACTTCAATACCAC-AGTTCCCTATGGAGC 1253
Query 1270 TTGGTTCCACAAAGAACAGGTAGTTGGTGGCTGGGTCACAGAGTATGGGAATCTACTGAC 1329
|||||| |||||| ||| | ||||| || ||||| | |||||||||||||||| ||||
Sbjct 1254 TTGGTTTGACAAAGGACA-G--GTTGGCGGATGGGTAATAGAGTATGGGAATCTAGTGAC 1310
Query 1330 CTTTGCAACGGTGAGAGGAGCGGCTCATATGGTGCCGTA-TGCGGAGCCCTCACGAGCTC 1388
|| |||||||||||||||||||||||||||||||| || | || |||| |||||||||
Sbjct 1311 ATTCGCAACGGTGAGAGGAGCGGCTCATATGGTGCCTTACT-CGCAGCCTTCACGAGCTT 1369
Query 1389 TGCACATGTTCAGTAGCTTTATGAATGGCCGGAGATTGCC-CAACAAA 1435
|||| |||||| |||||| || ||||||||||||||| || ||||
Sbjct 1370 TGCATTTGTTCACCAGCTTTGTGCTTGGCCGGAGATTGCCACA-CAAA 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62620362780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5